FC868817
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2) HSP 1 Score: 243.047 bits (619), Expect = 9.775e-64 Identity = 126/173 (72.83%), Postives = 140/173 (80.92%), Query Frame = 3 Query: 144 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650 GA S P++ F G LKK + S++ FK+ A E+DE KQT +DRWKGLAYD DDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNTM G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS Sbjct: 10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3) HSP 1 Score: 239.965 bits (611), Expect = 8.275e-63 Identity = 126/177 (71.19%), Postives = 139/177 (78.53%), Query Frame = 3 Query: 144 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650 GA S P+ SSF G L K VS+ + S ++ FK A EVDE KQT +DRWKGLAYD DDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMS Sbjct: 10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMS 186
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 1.081e-62 Identity = 122/172 (70.93%), Postives = 137/172 (79.65%), Query Frame = 3 Query: 144 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650 GA S P+ F G +K +K+ S ++ A E+D+ KQT DRWKGLAYD DDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNTMDGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS Sbjct: 10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 178
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 3.844e-60 Identity = 119/172 (69.19%), Postives = 135/172 (78.49%), Query Frame = 3 Query: 144 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKK--DRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650 GA S P++ F G LKK V+S + S + + T EN K+ D+WKGLAYD DDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS Sbjct: 10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 180
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 228.024 bits (580), Expect = 3.254e-59 Identity = 114/181 (62.98%), Postives = 136/181 (75.14%), Query Frame = 3 Query: 111 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650 A PL+ NGS A SVP+S F G+SLKK ++ R P S S + +T + EN++ D+W LA D DDQ DI RGKG VDSLFQAP GTH + SS++Y SQGLR Y++DN + YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMS Sbjct: 11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMS 188
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36 Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 3 Query: 204 SRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDEPDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650 +R+ V A ++ A + + RW+ + D DDQQDITRG+ VD LFQ G G TH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MS Sbjct: 18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMS 163
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.787e-18 Identity = 60/118 (50.85%), Postives = 61/118 (51.69%), Query Frame = 3 Query: 297 GLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650 GLAYD DDQQDITRG VDSLFQAPM GTHYAVMSSY+YISQGLR VPLILGIWGG KMGINPIMMS Sbjct: 1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMS 66
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.081e-17 Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 3 Query: 474 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650 YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+ ++S Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLIS 62
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.024e-17 Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 3 Query: 474 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650 YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI ++S Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLIS 62 The following BLAST results are available for this feature:
BLAST of FC868817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868817 ID=FC868817; Name=FC868817; organism=Citrus clementina; type=EST; length=652bpback to top |