Homology
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)
HSP 1 Score: 281.567 bits (719), Expect = 2.480e-75
Identity = 141/178 (79.21%), Postives = 156/178 (87.64%), Query Frame = 3
Query: 123 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
PLS NGSGA S VPS++FFG+SLKK +++ P K S +FKI A E+ E++QT KD+WKGLAYD DDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)
HSP 1 Score: 281.567 bits (719), Expect = 2.480e-75
Identity = 141/178 (79.21%), Postives = 156/178 (87.64%), Query Frame = 3
Query: 123 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
PLS NGSGA S VPS++FFG+SLKK +++ P K S +FKI A E+ E++QT KD+WKGLAYD DDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)
HSP 1 Score: 281.182 bits (718), Expect = 3.239e-75
Identity = 136/176 (77.27%), Postives = 152/176 (86.36%), Query Frame = 3
Query: 123 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
P + NGS ++ SVPSS+F G+SLKKV+SR SKV S S +I A VDE+KQT KDRWKGLA+D DDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN MDG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I+PIMMS
Sbjct: 15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMS 190
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)
HSP 1 Score: 274.248 bits (700), Expect = 3.959e-73
Identity = 139/179 (77.65%), Postives = 153/179 (85.47%), Query Frame = 3
Query: 126 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
L+ NGSGA S P+S+FFGTSLKK V+SR+P SKV + SFKI A E++E++QT KDRWKGLAYD DDQQDITRGKG VD LFQAPM GTHYAVMSSY+Y+S GLR LDN DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct: 16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 192
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)
HSP 1 Score: 273.478 bits (698), Expect = 6.754e-73
Identity = 136/179 (75.98%), Postives = 151/179 (84.36%), Query Frame = 3
Query: 126 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
L+ NGSG S PSS+FFGTSLKKV SSR+P SK+ S SFKI A E++E +QT+ DRW+GLAYD DDQQDITRGKG VDSLFQAPM GTHYAV+SS+ Y+S GLR YN DN DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct: 16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMS 194
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)
HSP 1 Score: 265.003 bits (676), Expect = 2.402e-70
Identity = 137/191 (71.73%), Postives = 153/191 (80.10%), Query Frame = 3
Query: 108 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
MAAAV PLS NGSG+ A S P+S+F G + VS +K + SFK+ A V E+KQT DRW+GLAYD DDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN MDG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMS
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMS 190
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)
HSP 1 Score: 264.618 bits (675), Expect = 3.137e-70
Identity = 133/180 (73.89%), Postives = 146/180 (81.11%), Query Frame = 3
Query: 123 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
PLS N S A TSVPS++FFG +LKKV + + KV + S +I AE VD KQT DRWKGL D DDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMS
Sbjct: 15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 194
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)
HSP 1 Score: 261.151 bits (666), Expect = 3.469e-69
Identity = 130/184 (70.65%), Postives = 146/184 (79.35%), Query Frame = 3
Query: 111 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
A PLS N S A TSVPS++FFG +LKKV + + KV + S +I AE D KQT DRWKGL D DDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMS
Sbjct: 11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMS 194
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)
HSP 1 Score: 257.684 bits (657), Expect = 3.835e-68
Identity = 127/183 (69.40%), Postives = 146/183 (79.78%), Query Frame = 3
Query: 102 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
S + A + N S VP+S+F G+ LK VSSR SK+ + +FKI AE DE KQT+KD+W+GLA+D DDQQDITRGKG D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct: 6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMS 187
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match:
RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)
HSP 1 Score: 255.758 bits (652), Expect = 1.457e-67
Identity = 128/182 (70.33%), Postives = 150/182 (82.42%), Query Frame = 3
Query: 111 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
A+ PLS N S A TSVPS++FFG SLKKV ++ + KV + + ++ A EVDE TK+DRWKGL + DDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMS
Sbjct: 11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMS 189
The following BLAST results are available for this feature:
BLAST of FC868817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 19
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 2.48e-75 / Id = 79.21 Expect = 2.48e-75 / Id = 79.21 Expect = 3.24e-75 / Id = 77.27 Expect = 3.96e-73 / Id = 77.65 Expect = 6.75e-73 / Id = 75.98 Expect = 2.40e-70 / Id = 71.73 Expect = 3.14e-70 / Id = 73.89 Expect = 3.47e-69 / Id = 70.65 Expect = 3.83e-68 / Id = 69.40 Expect = 1.46e-67 / Id = 70.33 Sequence RCA2_LARTR RCA1_LARTR RCA_MALDO RCA_PHAAU RCA_PHAVU RCA_ARATH RCA1_TOBAC RCA2_TOBAC RCA_CUCSA RCA_SOLPN
Match Name E-value Identity Description
RCA2_LARTR 2.480e-75 79.21 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR 2.480e-75 79.21 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO 3.239e-75 77.27 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU 3.959e-73 77.65 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU 6.754e-73 75.98 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH 2.402e-70 71.73 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC 3.137e-70 73.89 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC 3.469e-69 70.65 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA 3.835e-68 69.40 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN 1.457e-67 70.33 Ribulose bisphosphate carboxylase/oxygenase activa... [more]
Pages back to top