FC868889

Overview
NameFC868889
Unique NameFC868889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.008e-36
Identity = 80/175 (45.71%), Postives = 103/175 (58.86%), Query Frame = 1
Query:   97 NGFA-WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNS 600
            N FA W V+ +CE  F   W+L    KW P++  TY  RL  R        +L  +DIFV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L+F SL E S+FA+ WVPFCKKY+I  RAP  YF  + D         F +D   MK EYE     I A  + +
Sbjct:  283 NAFALWLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKA 457          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.008e-36
Identity = 76/165 (46.06%), Postives = 100/165 (60.61%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F   W+L    KW+PI+  TY  RL  R        +L P+DIFV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F +L E S+FA+ WVPFCKKY+I  RAP  YF ++ D         F +D   MK EYE     + A
Sbjct:  298 WLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQASFVKDRRAMKREYEEFKVRVNA 462          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.008e-36
Identity = 76/165 (46.06%), Postives = 100/165 (60.61%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F   W+L    KW+PI+  TY  RL  R        +L P+DIFV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F +L E S+FA+ WVPFCKKY+I  RAP  YF ++ D         F +D   MK EYE     + A
Sbjct:  298 WLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQASFVKDRRAMKREYEEFKVRVNA 462          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.752e-36
Identity = 77/165 (46.67%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W  + +CE  F F W+L    KW PI+  TY  RL  R        +L P+D+FV+T DP  EPP++T NTVLS+L+VDYP  ++ACYVSDDG + L F SL E ++FAK WVPFCKK+NI  RAP  YF ++ D         F ++   MK EYE     I A
Sbjct:  304 WLTSVICEIWFAFSWLLDQFPKWYPINRETYLDRLAIRYDRDGEPSQLVPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVACYVSDDGSAMLTFESLSETAEFAKKWVPFCKKFNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINA 468          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.547e-35
Identity = 76/165 (46.06%), Postives = 98/165 (59.39%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F   W+L    KW PI   TY  RL  R        +L P+D FV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F +L E S+FAK WVPFCKKY+I  RAP  YF ++ D      +  F ++   MK EYE     I A
Sbjct:  308 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLRFDKEGQTSQLAPIDFFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKYSIEPRAPEWYFQQKIDYLKDKVAPYFVRERRAMKREYEEFKVRINA 472          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.326e-35
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F   W+L    KW PI   TY  RL  R        +L P+D FV+T DP  EPP++T NTVLS+L+VDYP  +++CYVSDDG + L F +L E S+FAK WVPFCKK+NI  RAP  YF ++ D      +  F ++   MK +YE     I A
Sbjct:  308 WLISVICEIWFAMSWILDQFPKWLPIERETYLDRLSLRFDKEGQPSQLAPVDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYFQQKIDYLKDKVAASFVRERRAMKRDYEEFKVRINA 472          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.344e-35
Identity = 75/164 (45.73%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE-----LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W  + +CE  F F W+L    KW PI+  TY  RL  R  +     L P+D FV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F SL E ++FA+ WVPFCKKY+I  RAP  YF ++ D         F ++   MK +YE     I A
Sbjct:  218 WMTSVICEIWFGFSWILDQFPKWCPINRETYVDRLIARYGDGEDSGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKIHPSFVKERRAMKRDYEEYKVRINA 381          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.344e-35
Identity = 75/164 (45.73%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE-----LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W  + +CE  F F W+L    KW PI+  TY  RL  R  +     L P+D FV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F SL E ++FA+ WVPFCKKY+I  RAP  YF ++ D         F ++   MK +YE     I A
Sbjct:  218 WMTSVICEIWFGFSWILDQFPKWCPINRETYVDRLIARYGDGEDSGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKIHPSFVKERRAMKRDYEEYKVRINA 381          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.344e-35
Identity = 75/165 (45.45%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W V+ +CE  F   W+L    KW PI+  TY  RL  R        +L P+D+FV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F +L E ++FA+ WVPFCKK+NI  RAP  YF ++ D         F ++   MK EYE     I A
Sbjct:  301 WLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINA 465          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.344e-35
Identity = 75/165 (45.45%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W V+ +CE  F   W+L    KW PI+  TY  RL  R        +L P+D+FV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F +L E ++FA+ WVPFCKK+NI  RAP  YF ++ D         F ++   MK EYE     I A
Sbjct:  301 WLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINA 465          
The following BLAST results are available for this feature:
BLAST of FC868889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA3_ARATH3.008e-3645.71Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ORYSJ3.008e-3646.06Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI3.008e-3646.06Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA1_ARATH8.752e-3646.67Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA3_ORYSJ2.547e-3546.06Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA6_ORYSJ3.326e-3544.85Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA4_ORYSJ4.344e-3545.73Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI4.344e-3545.73Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA1_ORYSJ4.344e-3545.45Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI4.344e-3545.45Probable cellulose synthase A catalytic subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC31006B01EF AbioticL1 Citrus clementina cDNA clone C31006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868889 ID=FC868889; Name=FC868889; organism=Citrus clementina; type=EST; length=659bp
GATGATTGCCAAAAAACAACACATCGATTTTTAGACGTCACCATCTTGTT
CCTTCTTCTTTCTCTGCTCTTCTACAGGCTCTTATCTCTCAAGCACAATG
GATTCGCTTGGTTTGTTGCTTTTCTATGCGAATCTTGTTTCACCTTCGTC
TGGGTTCTCACCACTGGCACCAAATGGACTCCTATATCTTACAACACTTA
TCCACAACGGCTCCAAGAACGGATAAAGGAGCTTCCTCCACTAGACATTT
TTGTGACAACTGCAGATCCTTATCTAGAGCCTCCAATCCTCACAGTGAAC
ACAGTACTCTCTTTGTTGGCAGTTGATTATCCAGCTCATAGGCTTGCTTG
CTACGTGTCTGATGATGGCTGCTCACCTCTCAACTTTTACTCTCTCGTTG
AAGCATCAAAGTTTGCCAAGCTTTGGGTTCCATTTTGTAAGAAGTATAAT
ATTCGAGTTAGAGCTCCATTTAGATACTTCTTACGTGAGTCTGATGAACC
GCCTTGTGCGAGTTCATGGGAATTCCAGCAAGACTGGGAAAAGATGAAGG
AAGAGTACGAGAGACTTTGCGGAAACATTGAAGCTGCAGCCAACAATTCT
ACTTCATTTGATCTAACAGGGGAATTGGAAGTTTTCTTCACACAGTGCCA
GAATCATCC
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