FC868889

Overview
NameFC868889
Unique NameFC868889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.409e-35
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F   W+L    KW PI   TY  RL  R        +L P+D FV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F +L E S+FAK WVPFCK+Y++  RAP  YF ++ D      +  F ++   MK EYE     I A
Sbjct:  307 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLRFDKEGQQSQLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYFQQKIDYLKDKVAPNFVRERRAMKREYEEFKVRINA 471          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.409e-35
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F   W+L    KW PI   TY  RL  R        +L P+D FV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F +L E S+FAK WVPFCK+Y++  RAP  YF ++ D      +  F ++   MK EYE     I A
Sbjct:  307 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLRFDKEGQQSQLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYFQQKIDYLKDKVAPNFVRERRAMKREYEEFKVRINA 471          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.677e-35
Identity = 73/157 (46.50%), Postives = 97/157 (61.78%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE 561
            W  + +CE  F F W+L    KW PI+  T+  RL  R        +L P+D+FV+T DP  EPP++T NTVLS+LAVDYP  ++ACYVSDDG + L F +L E ++F+K WVPFCKK+NI  RAP  YF ++ D         F ++   MK EYE
Sbjct:  291 WLTSVICEIWFAFSWLLDQFPKWYPINRETFLDRLALRYDRDGEPSQLAPVDVFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVACYVSDDGSAMLTFEALSETAEFSKKWVPFCKKFNIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKREYE 447          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.677e-35
Identity = 76/177 (42.94%), Postives = 100/177 (56.50%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE------LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTG 621
            W  + +CE  F   W+L    KW PI   TY  RL  R +       L P+D+FV+T DP  EPP++T NTVLS+LA+DYP  +++CYVSDDG S L F SL E ++FA+ WVPFCKK++I  RAP  YF  + D         F ++   MK EYE     I A    ++   L G
Sbjct:  267 WLTSVICEIWFAVSWILDQFPKWFPIERETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPLKEPPLVTSNTVLSILAMDYPVEKISCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFTLKVDYLQDKVHPTFVKERRAMKREYEEFKVRINAQVAKASKVPLEG 443          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.264e-34
Identity = 76/165 (46.06%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F   WVL    KW PI   TY  RL  R +      EL  +D+FV+T DP  EPP++T NTVLS+LAVDYP  R+ACYVSDDG + L F +L E ++FA+ WVPFCKKY I  RAP  YF  + D         F ++   MK +YE     I A
Sbjct:  293 WLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSELAGVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDRVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYTIEPRAPEWYFCHKMDYLKNKVHPAFVRERRAMKRDYEEFKVKINA 457          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.651e-34
Identity = 75/165 (45.45%), Postives = 97/165 (58.79%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE------LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F   WVL    KW PI   TY  RL  R ++      L P+D+FV+T DP  EPP++T NTVLS+LAVDYP  ++ACYVSDDG + L F +L E ++FA+ WVPFCKKY I  RAP  YF  + D         F ++   MK +YE     I A
Sbjct:  305 WLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSGLSPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAPEWYFCHKMDYLKNKVHPAFVRERRAMKRDYEEFKVKINA 469          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.816e-34
Identity = 74/162 (45.68%), Postives = 99/162 (61.11%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI-KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAA 591
            WFV F+ E  F   WV+T  ++W P+    +  RL  R   +LP LD+FV TADP +EPP+L VNTVLS+ A+DYP  +LA Y+SDDG S L FY+L EA++FAK WVPFCKK+N+   +P  Y    S +  C  S       E++ + Y  +   IE AA
Sbjct:   66 WFVMFIVEIWFGLYWVVTQSSRWNPVWRFPFSDRLSRRYGSDLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAYL---SSKANCLDSAA-----EEVAKLYREMAARIETAA 219          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.816e-34
Identity = 75/165 (45.45%), Postives = 97/165 (58.79%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE------LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W  + +CE  F   W+L    KW+P++  TY  RL  R +       L P+D FV+T DP  EPPI+T NTVLS+LAVDYP  R++CYVSDDG S L F +L E ++FA+ WVPFCKK+ I  RAP  YF ++ D         F ++   MK EYE     I A
Sbjct:  242 WLASVICELWFALSWILDQLPKWSPVTRETYLDRLALRYERDGEPCRLAPIDFFVSTVDPLKEPPIITANTVLSILAVDYPVDRVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKFTIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINA 406          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.816e-34
Identity = 73/165 (44.24%), Postives = 98/165 (59.39%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE------LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W  + +CE  F   W+L    KW PI   TY  RL  R ++      L P+D+FV+T DP  EPP++T NTVLS+LAVDYP  ++ACYVSDDG + L F +L + ++FA+ WVPFCKK+NI  RAP  YF ++ D         F ++   MK +YE     I A
Sbjct:  306 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSGLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSDTAEFARKWVPFCKKFNIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKRDYEEFKVKINA 470          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.803e-34
Identity = 75/165 (45.45%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE------LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W  + +CE  F   W+L    KW PI   TY  RL  R +       L  +D+FV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG S L F SL E ++FA+ WVPFCKK++I  RAP  YF ++ D         F Q+   MK EYE     I A
Sbjct:  296 WLTSIICEIWFAVSWILDQFPKWYPIDRETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKVRINA 460          
The following BLAST results are available for this feature:
BLAST of FC868889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA5_ORYSJ7.409e-3544.85Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI7.409e-3544.85Probable cellulose synthase A catalytic subunit 5 ... [more]
CESAA_ARATH9.677e-3546.50Probable cellulose synthase A catalytic subunit 10... [more]
CESA7_ARATH9.677e-3542.94Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA5_ARATH1.264e-3446.06Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA6_ARATH1.651e-3445.45Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CSLE1_ARATH2.816e-3445.68Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CESA7_ORYSJ2.816e-3445.45Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA2_ARATH2.816e-3444.24Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA9_ORYSJ4.803e-3445.45Cellulose synthase A catalytic subunit 9 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC31006B01EF AbioticL1 Citrus clementina cDNA clone C31006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868889 ID=FC868889; Name=FC868889; organism=Citrus clementina; type=EST; length=659bp
GATGATTGCCAAAAAACAACACATCGATTTTTAGACGTCACCATCTTGTT
CCTTCTTCTTTCTCTGCTCTTCTACAGGCTCTTATCTCTCAAGCACAATG
GATTCGCTTGGTTTGTTGCTTTTCTATGCGAATCTTGTTTCACCTTCGTC
TGGGTTCTCACCACTGGCACCAAATGGACTCCTATATCTTACAACACTTA
TCCACAACGGCTCCAAGAACGGATAAAGGAGCTTCCTCCACTAGACATTT
TTGTGACAACTGCAGATCCTTATCTAGAGCCTCCAATCCTCACAGTGAAC
ACAGTACTCTCTTTGTTGGCAGTTGATTATCCAGCTCATAGGCTTGCTTG
CTACGTGTCTGATGATGGCTGCTCACCTCTCAACTTTTACTCTCTCGTTG
AAGCATCAAAGTTTGCCAAGCTTTGGGTTCCATTTTGTAAGAAGTATAAT
ATTCGAGTTAGAGCTCCATTTAGATACTTCTTACGTGAGTCTGATGAACC
GCCTTGTGCGAGTTCATGGGAATTCCAGCAAGACTGGGAAAAGATGAAGG
AAGAGTACGAGAGACTTTGCGGAAACATTGAAGCTGCAGCCAACAATTCT
ACTTCATTTGATCTAACAGGGGAATTGGAAGTTTTCTTCACACAGTGCCA
GAATCATCC
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