FC868889

Overview
NameFC868889
Unique NameFC868889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.803e-34
Identity = 75/165 (45.45%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE------LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W  + +CE  F   W+L    KW PI   TY  RL  R +       L  +D+FV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG S L F SL E ++FA+ WVPFCKK++I  RAP  YF ++ D         F Q+   MK EYE     I A
Sbjct:  296 WLTSIICEIWFAVSWILDQFPKWYPIDRETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKVRINA 460          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.272e-34
Identity = 74/170 (43.53%), Postives = 98/170 (57.65%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNS 600
            W  + +CE  F   W+L    KW PI   TY  RL  R +      EL P+D+FV+T DP  EPP++T NTVLS+LAVDYP  ++ACYVSDDG + L F +L   ++FA+ WVPFCKK++I  RAP  YF ++ D         F  +   MK +YE     I A  + S
Sbjct:  311 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSYTAEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKHKVDPAFVMERRAMKRDYEEFKVKINALVSVS 480          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.272e-34
Identity = 74/157 (47.13%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE 561
            W ++ +CE  F   W+L    KW PI+  TY  RL  R        +L  +DIFV+T DP  EPP++T NTVLS+LAVDYP  +++CYVSDDG + L F +L E S+FA+ WVPF KKYNI  RAP  YF ++ D         F +D   MK EYE
Sbjct:  305 WLLSVICEIWFALSWILDQFPKWFPINRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFVKKYNIEPRAPEWYFSQKIDYLKDKVHPSFVKDRRAMKREYE 461          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.272e-34
Identity = 72/157 (45.86%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE 561
            W  + +CE  F   WVL    KW+PI+  TY  RL  R +      +L  +D FV+T DP  EPP++T NTVLS+LA+DYP  +++CYVSDDG + L+F SLVE + FA+ WVPFCKKY+I  RAP  YF  + D         F ++   MK +YE
Sbjct:  213 WLTSVICEIWFAVSWVLDQFPKWSPINRETYIDRLSARFEREGEQSQLAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKYSIEPRAPEFYFSLKIDYLRDKVQPSFVKERRAMKRDYE 369          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.066e-33
Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 1
Query:  106 AWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE-LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAA 588
            AW      E  F   WV+T   +W P+   T+  RL ER KE LP +D+FV TADP+ EPP L ++T+LS++A +YP+ +++ Y+SDDG S L FY+L EAS FAK W+PFC++YNI  R+P  YF          S     ++W  +K  YE +   I++A
Sbjct:   54 AWLGMAAAELWFAVYWVITQSVRWCPVRRRTFKNRLAERYKENLPGVDVFVCTADPHAEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASMFAKKWLPFCRRYNIEPRSPAAYFSESEGHHNLCS----PKEWSFIKNLYEEMRERIDSA 211          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.066e-33
Identity = 73/189 (38.62%), Postives = 114/189 (60.32%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI-----------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE----RLCGNIEAAANNSTSFDLTGELE 630
            W ++ +CE  F F W+L    K  PI+ +T  + L+++             +LP +D+FV+TADP  EPP++T NT+LS+LAVDYP  +++CY+SDDG + L+F ++ EA+ FA LWVPFC+K+NI  R P  YF  + D     S  +F +D  K+K EY+    R+ G  ++    S +F+   E++
Sbjct:  301 WLMSIICELWFGFSWILDQIPKLCPINRSTDLEVLRDKFDMPSPSNPTGRSDLPGIDLFVSTADPEKEPPLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASFADLWVPFCRKHNIEPRNPDSYFSLKIDPTKNKSRIDFVKDRRKIKREYDEFKVRINGLPDSIRRRSDAFNAREEMK 489          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.545e-32
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  103 FAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE--LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANN 597
            +AW      E  F F WVLT   +W P+   T+  RL +   E  LP +DIFV TADP  EPP+L ++TVLS++A DY   +L  Y+SDD  S L FY L EAS+FAK W+PFCKKY +  R+P  YF + +  P         ++W  MKE Y+ +   + +  N+
Sbjct:   66 WAWLGMLAAELWFGFYWVLTLSVRWCPVYRRTFKDRLAQSYSEDELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDYLPEKLNIYLSDDAGSVLTFYVLCEASEFAKHWIPFCKKYKVEPRSPAAYFAKVASPPDGCG----PKEWFTMKELYKDMTDRVNSVVNS 228          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 68/162 (41.98%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  106 AWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE-LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAA 588
            AW      E  F   WV+    +W P    T+  RL ER ++ LP +DIFV TADP  EPP L ++T+LS++A +YP+ +++ Y+SDDG S L FY+L EAS FAK W+PFCK+YNI  R+P  YF     E     +    ++W  +K  YE +   I+ A
Sbjct:   59 AWLGMAAAELWFAVYWVIAQSVRWRPFRRRTFRDRLAERYEQNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASIFAKKWLPFCKRYNIEPRSPAAYF----SESKVHHNLCIPKEWALIKNLYEEMRERIDTA 216          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 74/197 (37.56%), Postives = 110/197 (55.84%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE----RLCGNIEAAANNSTSFDLTGELEVFFTQCQN 654
            W ++ +CE  F   W+L    K  PI+  T    L+E+ +           +LP LD+FV+TADP  EPP++T NT+LS+LA DYP  +LACYVSDDG + L F ++ EA+ FA +WVPFC+K+NI  R P  YF  + D        +F +D  ++K EY+    R+    ++    S ++    E++    Q QN
Sbjct:  323 WGMSVVCELWFALSWLLDQLPKLCPINRATDLNVLKEKFETPTPSNPTGKSDLPGLDMFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFSLKRDPYKNKVKADFVKDRRRVKREYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKLQRQN 519          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.221e-30
Identity = 64/175 (36.57%), Postives = 100/175 (57.14%), Query Frame = 1
Query:  124 LCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFTQC 648
            L +    F+W  TT  +  PI    YP++   + ++ P LD+F+ TADPY EPP++ VNT LS++A +YP+H+++ YVSDDG S L  ++L+EA+KF+K W+PFCK  N++ R+P  YF         + S     + E +K  YE +   +E           +G++E  F  C
Sbjct:   59 LSDIVLAFMWATTTSLRLNPIHRTEYPEKYAAKPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKNNNVQDRSPEVYF--------SSKSHSSSDEAENLKMMYEDMKSRVEHVVE-------SGKVETAFIAC 218          
The following BLAST results are available for this feature:
BLAST of FC868889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA9_ORYSI4.803e-3445.45Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ARATH6.272e-3443.53Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA8_ORYSJ6.272e-3447.13Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA8_ARATH6.272e-3445.86Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CSLE6_ORYSJ4.066e-3342.59Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLD4_ARATH4.066e-3338.62Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLE2_ORYSJ1.545e-3241.92Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE1_ORYSJ1.107e-3041.98Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLD3_ARATH1.107e-3037.56Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLG2_ARATH3.221e-3036.57Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC31006B01EF AbioticL1 Citrus clementina cDNA clone C31006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868889 ID=FC868889; Name=FC868889; organism=Citrus clementina; type=EST; length=659bp
GATGATTGCCAAAAAACAACACATCGATTTTTAGACGTCACCATCTTGTT
CCTTCTTCTTTCTCTGCTCTTCTACAGGCTCTTATCTCTCAAGCACAATG
GATTCGCTTGGTTTGTTGCTTTTCTATGCGAATCTTGTTTCACCTTCGTC
TGGGTTCTCACCACTGGCACCAAATGGACTCCTATATCTTACAACACTTA
TCCACAACGGCTCCAAGAACGGATAAAGGAGCTTCCTCCACTAGACATTT
TTGTGACAACTGCAGATCCTTATCTAGAGCCTCCAATCCTCACAGTGAAC
ACAGTACTCTCTTTGTTGGCAGTTGATTATCCAGCTCATAGGCTTGCTTG
CTACGTGTCTGATGATGGCTGCTCACCTCTCAACTTTTACTCTCTCGTTG
AAGCATCAAAGTTTGCCAAGCTTTGGGTTCCATTTTGTAAGAAGTATAAT
ATTCGAGTTAGAGCTCCATTTAGATACTTCTTACGTGAGTCTGATGAACC
GCCTTGTGCGAGTTCATGGGAATTCCAGCAAGACTGGGAAAAGATGAAGG
AAGAGTACGAGAGACTTTGCGGAAACATTGAAGCTGCAGCCAACAATTCT
ACTTCATTTGATCTAACAGGGGAATTGGAAGTTTTCTTCACACAGTGCCA
GAATCATCC
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