FC868889

Overview
NameFC868889
Unique NameFC868889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.495e-30
Identity = 64/175 (36.57%), Postives = 100/175 (57.14%), Query Frame = 1
Query:  124 LCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVFFTQC 648
            L +    F+W  TT  +  P+     P++   + ++ P LD+F+ TADPY EPP++ VNT LS++A +YP+ +++ YVSDDG S L F++L+EA+KF+K W+PFCKK N++ R+P  YF  ES             + E +K  YE +   +E           +G++E  F  C
Sbjct:   62 LSDIVLAFMWATTTSLRLNPVHRTECPEKYAAKPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYFSSESHSR--------SDEAENLKMMYEDMKSRVEHVVE-------SGKVETAFITC 221          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.176e-30
Identity = 70/190 (36.84%), Postives = 110/190 (57.89%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE----RLCGNIEAAANNSTSFDLTGELEV 633
            W ++ +CE  F F W+L    K  P++ +T    L+E+ +           +LP LD+FV+TADP  EP + T  T+LS+LAVDYP  +LACYVSDDG + L F ++ EA+ FA +WVPFCKK++I  R P  YF  + D        +F +D  ++K E++    R+ G  ++    S +F+   ++++
Sbjct:  326 WGMSIVCELWFAFSWLLDMLPKVNPVNRSTDLAVLKEKFETPSPSNPHGRSDLPGLDVFVSTADPEKEPVLTTATTILSILAVDYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCKKHDIEPRNPDSYFSVKGDPTKGKRRNDFVKDRRRVKREFDEFKVRINGLPDSIRRRSDAFNAREDMKM 515          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.224e-29
Identity = 70/189 (37.04%), Postives = 107/189 (56.61%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE-----------LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE----RLCGNIEAAANNSTSFDLTGELE 630
            W ++ +CE  F F W+L    K  PI+  T    L ++ ++           LP +D+FV+TADP  EPP++T NT+LS+LAVDYP  +L+ Y+SDDG + L F ++ EA +FA+ WVPFC+K++I  R P  YF  + D        +F +D   +K EY+    R+ G  E     +  F++  EL+
Sbjct:  212 WGLSIVCEIWFAFSWILDILPKLNPINRATDLAALHDKFEQPSPSNPTGRSDLPGVDVFVSTADPEKEPPLVTANTLLSILAVDYPIEKLSAYISDDGGAILTFEAMAEAVRFAEYWVPFCRKHDIEPRNPDSYFSIKKDPTKNKKRQDFVKDRRWIKREYDEFKVRINGLPEQIKKRAEQFNMREELK 400          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.599e-29
Identity = 73/194 (37.63%), Postives = 107/194 (55.15%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE----RLCGNIEAAANNSTSFDLTGELEVFFTQ 645
            W ++ +CE  F   WVL    K  PI+  T    L+++ +           +LP +DIFV+TADP  EP ++T NT+LS+LA DYP  +LACYVSDDG + L F ++ EA+ FA LWVPFC+K+ I  R P  YF  + D        +F +D  ++K EY+    R+ G  +A    S ++    E++    Q
Sbjct:  296 WGMSIVCELWFALSWVLDQLPKLCPINRATDLSVLKDKFETPTPSNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYFNLKRDPFKNKVKGDFVKDRRRVKREYDEFKVRVNGLPDAIRRRSDAYHAREEIQAMNLQ 489          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.599e-29
Identity = 73/194 (37.63%), Postives = 107/194 (55.15%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE----RLCGNIEAAANNSTSFDLTGELEVFFTQ 645
            W ++ +CE  F   WVL    K  PI+  T    L+++ +           +LP +DIFV+TADP  EP ++T NT+LS+LA DYP  +LACYVSDDG + L F ++ EA+ FA LWVPFC+K+ I  R P  YF  + D        +F +D  ++K EY+    R+ G  +A    S ++    E++    Q
Sbjct:  296 WGMSIVCELWFALSWVLDQLPKLCPINRATDLSVLKDKFETPTPSNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYFNLKRDPFKNKVKGDFVKDRRRVKREYDEFKVRVNGLPDAIRRRSDAYHAREEIQAMNLQ 489          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.652e-29
Identity = 64/162 (39.51%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE 561
            W ++ +CE  F F W+L    K  PI+       L+E+ +           +LP LD+F++TADPY EP ++T NT+LS+LA +YP  +L  Y+SDDG + L F S+ EA  FAK+WVPFC+K++I  R P  YF ++ D        +F +D   +K EY+
Sbjct:  184 WGISIVCEFWFAFSWLLDQMPKLNPINRAADLAALKEKFESPSPTNPTGRSDLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYFTQKGDPTKGKKRPDFVKDRRWIKREYD 345          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.652e-29
Identity = 64/162 (39.51%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE 561
            W ++ +CE  F F W+L    K  PI+       L+E+ +           +LP LD+F++TADPY EP ++T NT+LS+LA +YP  +L  Y+SDDG + L F S+ EA  FAK+WVPFC+K++I  R P  YF ++ D        +F +D   +K EY+
Sbjct:  184 WGISIVCEFWFAFSWLLDQMPKLNPINRAADLAALKEKFESPSPTNPTGRSDLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYFTQKGDPTKGKKRPDFVKDRRWIKREYD 345          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.652e-29
Identity = 70/188 (37.23%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE----RLCGNIEAAANNSTSFDLTGEL 627
            W ++  CE  F F W+L +  K  P+        L ER +           +LP +D+FVT+ADP  EPP++T NT+LS+LA DYP  +LACY+SDDG + L+F +L E + FA+ WVPFC+K+ +  R P  YF ++ D        +F ++  K+K EY+    R+    EA    S +++   EL
Sbjct:  356 WAMSVACEVWFAFSWLLDSLPKLCPVHRAADLAVLAERFESPTARNPKGRSDLPGIDVFVTSADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLSFEALAETASFARTWVPFCRKHGVEPRCPEAYFGQKRDFLKNKVRVDFVRERRKVKREYDEFKVRVNSLPEAIRRRSDAYNAGEEL 543          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 65/161 (40.37%), Postives = 99/161 (61.49%), Query Frame = 1
Query:  124 LCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYF---LR-ESDEPPCASSWEFQQDWEKMKEEYERL--CGNIEAA 588
            L +    F+W  TT  ++ P+    YP++     ++ P LD+F+ TADPY EPP++ VNT LS++A +YP+ +++ YVSDDG S L  ++L+EA+KF+K W+PFCKK N++ R+P  YF   LR  SDE     +   +  +E MK   E +   G +E A
Sbjct:   81 LSDIVLAFMWATTTSLRYKPVRRTEYPEKYAAEPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYFSSKLRSRSDE-----AENIKMMYEDMKSRVEHVVESGKVETA 236          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 65/162 (40.12%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE 561
            W ++ +CE  F   W+L    K  P++  T    L+++ +           +LP LDIFV+TADP  EPP++T NT+LS+LA DYP  +L+CYVSDDG + L F ++ EA+ FA +WVPFC+K++I  R P  YF  + D        +F +D  ++K EY+
Sbjct:  345 WGMSVVCELWFGLSWLLDQLPKLCPVNRATDLAVLKDKFETPTPSNPNGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVKDRRRVKREYD 506          
The following BLAST results are available for this feature:
BLAST of FC868889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLG1_ARATH5.495e-3036.57Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLD3_ORYSJ7.176e-3036.84Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD1_ARATH1.224e-2937.04Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD1_ORYSJ1.599e-2937.63Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI1.599e-2937.63Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD5_ORYSJ4.652e-2939.51Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI4.652e-2939.51Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD4_ORYSJ4.652e-2937.23Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLG3_ARATH6.075e-2940.37Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLD2_ORYSJ6.075e-2940.12Cellulose synthase-like protein D2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC31006B01EF AbioticL1 Citrus clementina cDNA clone C31006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868889 ID=FC868889; Name=FC868889; organism=Citrus clementina; type=EST; length=659bp
GATGATTGCCAAAAAACAACACATCGATTTTTAGACGTCACCATCTTGTT
CCTTCTTCTTTCTCTGCTCTTCTACAGGCTCTTATCTCTCAAGCACAATG
GATTCGCTTGGTTTGTTGCTTTTCTATGCGAATCTTGTTTCACCTTCGTC
TGGGTTCTCACCACTGGCACCAAATGGACTCCTATATCTTACAACACTTA
TCCACAACGGCTCCAAGAACGGATAAAGGAGCTTCCTCCACTAGACATTT
TTGTGACAACTGCAGATCCTTATCTAGAGCCTCCAATCCTCACAGTGAAC
ACAGTACTCTCTTTGTTGGCAGTTGATTATCCAGCTCATAGGCTTGCTTG
CTACGTGTCTGATGATGGCTGCTCACCTCTCAACTTTTACTCTCTCGTTG
AAGCATCAAAGTTTGCCAAGCTTTGGGTTCCATTTTGTAAGAAGTATAAT
ATTCGAGTTAGAGCTCCATTTAGATACTTCTTACGTGAGTCTGATGAACC
GCCTTGTGCGAGTTCATGGGAATTCCAGCAAGACTGGGAAAAGATGAAGG
AAGAGTACGAGAGACTTTGCGGAAACATTGAAGCTGCAGCCAACAATTCT
ACTTCATTTGATCTAACAGGGGAATTGGAAGTTTTCTTCACACAGTGCCA
GAATCATCC
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