FC868889

Overview
NameFC868889
Unique NameFC868889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 65/162 (40.12%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE 561
            W ++ +CE  F   W+L    K  P++  T    L+++ +           +LP LDIFV+TADP  EPP++T NT+LS+LA DYP  +L+CYVSDDG + L F ++ EA+ FA +WVPFC+K++I  R P  YF  + D        +F +D  ++K EY+
Sbjct:  345 WGMSVVCELWFGLSWLLDQLPKLCPVNRATDLAVLKDKFETPTPSNPNGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVKDRRRVKREYD 506          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 70/197 (35.53%), Postives = 109/197 (55.33%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE----RLCGNIEAAANNSTSFDLTGELEVFFTQCQN 654
            W ++ +CE  F   W+L    K  PI+  T  Q L+E+ +           +LP  D+FV+TADP  EPP++T NT+LS+LA +YP  +L+CYVSDDG + L F ++ EA+ FA +WVPFC+K+ I  R P  YF  + D        +F +D  ++K E++    R+    ++    S ++    E++    Q QN
Sbjct:  326 WGMSVVCELWFALSWLLDQLPKLCPINRATDLQVLKEKFETPTASNPTGKSDLPGFDVFVSTADPEKEPPLVTANTILSILAAEYPVEKLSCYVSDDGGALLTFEAMAEAASFANIWVPFCRKHAIEPRNPDSYFSLKRDPYKNKVKSDFVKDRRRVKREFDEFKVRVNSLPDSIRRRSDAYHAREEIKAMKMQRQN 522          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.353e-28
Identity = 70/188 (37.23%), Postives = 107/188 (56.91%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE----RLCGNIEAAANNSTSFDLTGEL 627
            W ++  CE  F   W+L    K  P++  T    L+ER +           +LP +D+FV+TADP  EPP++T NT+LS+LAVDYP  +LACY+SDDG + L F +L + + FA  WVPFC+K+NI  R P  YF ++ +        +F ++  ++K EY+    R+    EA    S ++++  EL
Sbjct:  347 WGMSTTCELWFALSWLLDQLPKLCPVNRLTDLGVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAQTASFASTWVPFCRKHNIEPRNPEAYFGQKRNFLKNKVRLDFVRERRRVKREYDEFKVRINSLPEAIRRRSDAYNVHEEL 534          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 63/169 (37.28%), Postives = 99/169 (58.58%), Query Frame = 1
Query:   91 KHNGFAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAAN 594
            +   + W ++ + +  F F WVL    K +PI        L +R   +LP +D+FVTT DP  EP + TVNT+LS+LA DYP  R ACY+SDDG + +++ ++VE +KFA+LWVPFC+K+ +  R+P  YF  ++         E   D  +++ EYE     I++ ++
Sbjct:   91 RDGAWLWTMSMVGDVWFGFSWVLNQLPKQSPIKRVPDIAALADRHSGDLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYFAMKTQAYKGGVPGELMSDHRRVRREYEEFKVRIDSLSS 259          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.146e-27
Identity = 63/163 (38.65%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAAN 594
            W ++ + +  F F WVL    K +PI        L +R   +LP +D+FVTT DP  EP + TVNT+LS+LA DYP  R ACY+SDDG + +++ ++VE +KFA+LWVPFC+K+ +  R+P  YF  ++         E   D  +++ EYE     I++ ++
Sbjct:  127 WTMSMVGDVWFGFSWVLNQLPKLSPIKRVPDLAALADRHSGDLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYFAMKTQAYKGGVPGELMSDHRRVRREYEEFKVRIDSLSS 289          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27
Identity = 61/170 (35.88%), Postives = 97/170 (57.06%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-----------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++ +CE  F F W+L    K  P+++ T  + L+   +           +LP +D+FV+TAD   EPP++T NT+LS+L+VDYP  +L+ Y+SDDG S + F ++ EA+ FAK+WVPFC+K+ I  R P  YF  + D        +F ++   +K  Y+     + A
Sbjct:  151 WLLSVICELWFAFSWLLDQIPKLFPVNHATDIEALKATFETPNPDNPTGKSDLPGIDVFVSTADAEKEPPLVTANTILSILSVDYPVEKLSVYISDDGGSLVTFEAIAEAASFAKIWVPFCRKHKIEPRNPESYFGLKRDPYKDKVRHDFVRERRYVKRAYDEFKVRVNA 320          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 65/157 (41.40%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE------LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE 561
            W  +  CE      W++    K +P +  TY  RL  R ++      L  +D+FV  AD   EPP+ T NTVLS+LA DYPA  +ACYV DDG   L F SL EA+ FA+ W+PFC+++ +  RAP  YF R  D     ++  F +D   MK EYE
Sbjct:   77 WVTSVACELWLAASWLIAQLPKLSPANRVTYLDRLASRYEKGGEASRLAGVDVFVAAADAAREPPLATANTVLSVLAADYPAGGVACYVHDDGADMLVFESLFEAAGFARRWIPFCRRHGVEPRAPELYFARGVDYLRDRAAPSFVKDRRAMKREYE 233          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = 1
Query:  103 FAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            F W+++ + +  F   W+L    K  PI        LQ++         LP LD+F+ T DP  EP I T+N +LS+LA DYP  + ACY+SDDG S +++  L+E +KFA LWVPFC+K++I  RAP  YF  +S     ++  +F  D   M+ EY+     ++A
Sbjct:  120 FFWWISVIGDFWFGVSWLLNQVAKLKPIRRVPDLNLLQQQFDLPDGNSNLPGLDVFINTVDPINEPMIYTMNAILSILAADYPVDKHACYLSDDGGSIIHYDGLLETAKFAALWVPFCRKHSIEPRAPESYFAVKSRPYAGSAPEDFLSDHRYMRREYDEFKVRLDA 286          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 1
Query:   91 KHNGFAWFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIK-------ELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            +   + W ++   +  F F W L    K  PI        L +R +       ELP +D+FVTT DP  EP + TVN++LS+LA DYP  R ACY+SDDG + +++ ++VE +KFA+LWVPFC+K+ +  RAP  YF  ++       + E   D  +++ EYE     I++
Sbjct:  121 RDGAWLWTMSMAGDVWFGFSWALNQLPKLNPIKRVADLAALADRQQHGTSGGGELPGVDVFVTTVDPVDEPILYTVNSILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRAPESYFAMKTQAYRGGVAGELMSDRRRVRREYEEFKVRIDS 292          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 64/157 (40.76%), Postives = 86/157 (54.78%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERI------KELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYE 561
            W  +   E  F F W+L    K  PI+       L+ R         LP LDIFVTTADP  EP + T N++LS+LA DYP  R  CY+SDD    L + ++ EA+KFA LWVPFC+K+ I  R P  YF  +S      +  EF  D  ++++EY+
Sbjct:  136 WVTSIAGEFWFGFSWLLDQLPKLNPINRVPDLAVLRRRFDHADGTSSLPGLDIFVTTADPIKEPILSTANSILSILAADYPVDRNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYFELKSHPYMGRAQEEFVNDRRRVRKEYD 292          
The following BLAST results are available for this feature:
BLAST of FC868889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLD2_ORYSI6.075e-2940.12Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ARATH6.075e-2935.53Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD5_ARATH1.353e-2837.23Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLF1_ORYSJ8.773e-2837.28Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF2_ORYSJ1.146e-2738.65Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLD6_ARATH4.354e-2735.88Putative cellulose synthase-like protein D6 OS=Ara... [more]
CESAB_ORYSJ5.686e-2741.40Putative cellulose synthase A catalytic subunit 11... [more]
CSLF8_ORYSJ1.654e-2637.72Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF4_ORYSJ1.654e-2636.63Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF6_ORYSJ5.322e-2540.76Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionC31006B01EF AbioticL1 Citrus clementina cDNA clone C31006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868889 ID=FC868889; Name=FC868889; organism=Citrus clementina; type=EST; length=659bp
GATGATTGCCAAAAAACAACACATCGATTTTTAGACGTCACCATCTTGTT
CCTTCTTCTTTCTCTGCTCTTCTACAGGCTCTTATCTCTCAAGCACAATG
GATTCGCTTGGTTTGTTGCTTTTCTATGCGAATCTTGTTTCACCTTCGTC
TGGGTTCTCACCACTGGCACCAAATGGACTCCTATATCTTACAACACTTA
TCCACAACGGCTCCAAGAACGGATAAAGGAGCTTCCTCCACTAGACATTT
TTGTGACAACTGCAGATCCTTATCTAGAGCCTCCAATCCTCACAGTGAAC
ACAGTACTCTCTTTGTTGGCAGTTGATTATCCAGCTCATAGGCTTGCTTG
CTACGTGTCTGATGATGGCTGCTCACCTCTCAACTTTTACTCTCTCGTTG
AAGCATCAAAGTTTGCCAAGCTTTGGGTTCCATTTTGTAAGAAGTATAAT
ATTCGAGTTAGAGCTCCATTTAGATACTTCTTACGTGAGTCTGATGAACC
GCCTTGTGCGAGTTCATGGGAATTCCAGCAAGACTGGGAAAAGATGAAGG
AAGAGTACGAGAGACTTTGCGGAAACATTGAAGCTGCAGCCAACAATTCT
ACTTCATTTGATCTAACAGGGGAATTGGAAGTTTTCTTCACACAGTGCCA
GAATCATCC
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