FC868889

Overview
NameFC868889
Unique NameFC868889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25
Identity = 59/162 (36.42%), Postives = 91/162 (56.17%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE--LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYF-LRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W+++   +  F   W+L   +K  P+        L+ R  +  LP +D+F+ T DP  EP + T+N++LS+LA DYPA R A Y+SDDG S  ++  L+E ++FA LWVPFC+K+ +  RAP  YF  + +     A   EF  D   ++ EYE     ++A
Sbjct:  108 WWISIAGDFWFGVTWLLNQASKLNPVKRVPDLSLLRRRFDDGGLPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYFAAKAAPYAGPALPEEFFGDRRLVRREYEEFKARLDA 269          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25
Identity = 65/167 (38.92%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQR--------LQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++   +  F F W+L    K+ P+   T P          L +    LP +D+FVTTADP  EP + T+N VLS+LA DYP  R ACY+SDD  + + + +LVE +KFA LWVPFC+K+ I  R+P  YF  E+     ++  EF+ D   +  EY+     +EA
Sbjct:  120 WTMSVAGDVWFGFSWLLNQLPKFNPVK--TIPDLTALRQYCDLADGSYRLPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYFELEAPSYTGSAQEEFKNDSRIVHLEYDEFKVRLEA 284          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.078e-25
Identity = 65/167 (38.92%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQR--------LQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585
            W ++   +  F F W+L    K+ P+   T P          L +    LP +D+FVTTADP  EP + T+N VLS+LA DYP  R ACY+SDD  + + + +LVE +KFA LWVPFC+K+ I  R+P  YF  E+     ++  EF+ D   +  EY+     +EA
Sbjct:  120 WTMSVAGDVWFGFSWLLNQLPKFNPVK--TIPDLTALRQYCDLADGSYRLPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYFELEAPSYTGSAPEEFKNDSRIVHLEYDEFKVRLEA 284          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.685e-24
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYF 480
            W  +   E  F F+WVL    K  P+        L +    LP +D+FVTTADP  EPP+ T NTVLS+LA  YPA ++ CYVSDD  + +   ++VEA++FA LWVPFC+K+ +  R P  YF
Sbjct:  102 WTASIAGELWFAFMWVLDQLPKTMPVRRAVDVTALNDDTL-LPAMDVFVTTADPDKEPPLATANTVLSILAAGYPAGKVTCYVSDDAGAEVTRGAVVEAARFAALWVPFCRKHGVEPRNPEAYF 224          
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.500e-19
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  340 RLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVF 636
            RLACYVSDDGCSP+ +Y+L EA+ FA+ WVPFC+++ + VRAPFRYF    +  P  +  +F  DW  MK EY++L   IE A   +      GE   F
Sbjct:  173 RLACYVSDDGCSPVTYYALREAAGFARTWVPFCRRHGVAVRAPFRYFASAPEFGP--ADRKFLDDWTFMKSEYDKLVRRIEDADETTLLRQGGGEFAEF 269          
The following BLAST results are available for this feature:
BLAST of FC868889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF9_ORYSJ6.951e-2536.42Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF3_ORYSI6.951e-2538.92Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSJ9.078e-2538.92Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF7_ORYSJ7.685e-2445.16Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLH3_ORYSJ1.500e-1947.47Putative cellulose synthase-like protein H3 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC31006B01EF AbioticL1 Citrus clementina cDNA clone C31006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868889 ID=FC868889; Name=FC868889; organism=Citrus clementina; type=EST; length=659bp
GATGATTGCCAAAAAACAACACATCGATTTTTAGACGTCACCATCTTGTT
CCTTCTTCTTTCTCTGCTCTTCTACAGGCTCTTATCTCTCAAGCACAATG
GATTCGCTTGGTTTGTTGCTTTTCTATGCGAATCTTGTTTCACCTTCGTC
TGGGTTCTCACCACTGGCACCAAATGGACTCCTATATCTTACAACACTTA
TCCACAACGGCTCCAAGAACGGATAAAGGAGCTTCCTCCACTAGACATTT
TTGTGACAACTGCAGATCCTTATCTAGAGCCTCCAATCCTCACAGTGAAC
ACAGTACTCTCTTTGTTGGCAGTTGATTATCCAGCTCATAGGCTTGCTTG
CTACGTGTCTGATGATGGCTGCTCACCTCTCAACTTTTACTCTCTCGTTG
AAGCATCAAAGTTTGCCAAGCTTTGGGTTCCATTTTGTAAGAAGTATAAT
ATTCGAGTTAGAGCTCCATTTAGATACTTCTTACGTGAGTCTGATGAACC
GCCTTGTGCGAGTTCATGGGAATTCCAGCAAGACTGGGAAAAGATGAAGG
AAGAGTACGAGAGACTTTGCGGAAACATTGAAGCTGCAGCCAACAATTCT
ACTTCATTTGATCTAACAGGGGAATTGGAAGTTTTCTTCACACAGTGCCA
GAATCATCC
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