FC868889
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25 Identity = 59/162 (36.42%), Postives = 91/162 (56.17%), Query Frame = 1 Query: 109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKE--LPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYF-LRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585 W+++ + F W+L +K P+ L+ R + LP +D+F+ T DP EP + T+N++LS+LA DYPA R A Y+SDDG S ++ L+E ++FA LWVPFC+K+ + RAP YF + + A EF D ++ EYE ++A Sbjct: 108 WWISIAGDFWFGVTWLLNQASKLNPVKRVPDLSLLRRRFDDGGLPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYFAAKAAPYAGPALPEEFFGDRRLVRREYEEFKARLDA 269
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25 Identity = 65/167 (38.92%), Postives = 93/167 (55.69%), Query Frame = 1 Query: 109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQR--------LQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585 W ++ + F F W+L K+ P+ T P L + LP +D+FVTTADP EP + T+N VLS+LA DYP R ACY+SDD + + + +LVE +KFA LWVPFC+K+ I R+P YF E+ ++ EF+ D + EY+ +EA Sbjct: 120 WTMSVAGDVWFGFSWLLNQLPKFNPVK--TIPDLTALRQYCDLADGSYRLPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYFELEAPSYTGSAQEEFKNDSRIVHLEYDEFKVRLEA 284
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.078e-25 Identity = 65/167 (38.92%), Postives = 93/167 (55.69%), Query Frame = 1 Query: 109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQR--------LQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEA 585 W ++ + F F W+L K+ P+ T P L + LP +D+FVTTADP EP + T+N VLS+LA DYP R ACY+SDD + + + +LVE +KFA LWVPFC+K+ I R+P YF E+ ++ EF+ D + EY+ +EA Sbjct: 120 WTMSVAGDVWFGFSWLLNQLPKFNPVK--TIPDLTALRQYCDLADGSYRLPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYFELEAPSYTGSAPEEFKNDSRIVHLEYDEFKVRLEA 284
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.685e-24 Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 1 Query: 109 WFVAFLCESCFTFVWVLTTGTKWTPISYNTYPQRLQERIKELPPLDIFVTTADPYLEPPILTVNTVLSLLAVDYPAHRLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYF 480 W + E F F+WVL K P+ L + LP +D+FVTTADP EPP+ T NTVLS+LA YPA ++ CYVSDD + + ++VEA++FA LWVPFC+K+ + R P YF Sbjct: 102 WTASIAGELWFAFMWVLDQLPKTMPVRRAVDVTALNDDTL-LPAMDVFVTTADPDKEPPLATANTVLSILAAGYPAGKVTCYVSDDAGAEVTRGAVVEAARFAALWVPFCRKHGVEPRNPEAYF 224
BLAST of FC868889 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3) HSP 1 Score: 96.2857 bits (238), Expect = 1.500e-19 Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 340 RLACYVSDDGCSPLNFYSLVEASKFAKLWVPFCKKYNIRVRAPFRYFLRESDEPPCASSWEFQQDWEKMKEEYERLCGNIEAAANNSTSFDLTGELEVF 636 RLACYVSDDGCSP+ +Y+L EA+ FA+ WVPFC+++ + VRAPFRYF + P + +F DW MK EY++L IE A + GE F Sbjct: 173 RLACYVSDDGCSPVTYYALREAAGFARTWVPFCRRHGVAVRAPFRYFASAPEFGP--ADRKFLDDWTFMKSEYDKLVRRIEDADETTLLRQGGGEFAEF 269 The following BLAST results are available for this feature:
BLAST of FC868889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868889 ID=FC868889; Name=FC868889; organism=Citrus clementina; type=EST; length=659bpback to top |