FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12776 contig Ccv1_Contig12776:132..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_SCHCO (Actin-1 OS=Schizophyllum commune GN=ACT1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 71/192 (36.98%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN   FY + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    4 EVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGFALPHAILRLDLAGRDLTDFLIKNL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_NAEGR (Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 75/200 (37.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   82 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS 648
            +A V+D GS + KAG A  D AP  V PS + R L+        +    V D  M          P+  G I +WD ME + HH  Y  L       G +L   PL +PKA RE++ Q+MFETF +   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L +   S N S
Sbjct:    5 QALVIDNGSGMCKAGFAGED-APRAVFPSLIGRPLQRSIMVGMGNKDAYVGDEAMSKKGILALKYPIEHGIITNWDDMEKIWHHTFYNELRVGPEEHGVLLTEAPL-NPKANREKMTQIMFETFRVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILMERGYSFNTS 202          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_YEAST (Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 70/195 (35.90%), Postives = 97/195 (49.74%), Query Frame = 1
Query:   73 SKMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            S++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MFETFN+  FY S QAVLSLY+ GR +G  +D G G   + P+  G     A  R ++ G DLT  L + L +
Sbjct:    3 SEVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSE 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_SACBA (Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 70/195 (35.90%), Postives = 97/195 (49.74%), Query Frame = 1
Query:   73 SKMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            S++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MFETFN+  FY S QAVLSLY+ GR +G  +D G G   + P+  G     A  R ++ G DLT  L + L +
Sbjct:    3 SEVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSE 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_ENCCU (Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 72/188 (38.30%), Postives = 96/188 (51.06%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPS-----QMKRVLEDGSSSVDNSTLVEDVTMD-------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLL 606
            ++A V+D GS ++K+G A  D AP  V PS     + K V+  G    D     E  T         P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+  FY S QAVLSLYA GR +G   D G G   + P+ EG     A  R ++ G DLT  L
Sbjct:    5 VQALVIDIGSGVVKSGFA-GDDAPRAVFPSIVGFPKHKGVMV-GMGQKDAYVGDEAQTKRGILHIKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKITQIMFETFNVPSFYISIQAVLSLYASGRTTGIVFDSGDGVSHVVPIYEGYSLPYAINRIDLAGRDLTDYL 189          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_CANGA (Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 70/195 (35.90%), Postives = 97/195 (49.74%), Query Frame = 1
Query:   73 SKMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            S++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MFETFN+  FY S QAVLSLY+ GR +G  +D G G   + P+  G     A  R ++ G DLT  L + L +
Sbjct:    3 SEVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSE 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_SCHCO (Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 70/192 (36.46%), Postives = 98/192 (51.04%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            +++A V+D GS + KAG A  D AP  V PS + R    G         S V +    +   +    P+  G + +WD ME + HH  Y  L      E  +L T+   +PK  RE++ Q+MFETFN+  F+ S QAVLSLYA GR +G  +D G G     P+ EG     A +R ++ G DLT+ L   L
Sbjct:    4 EIQAVVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHHGVMVGLSNKDSYVGDEAQAKRGVLTLKYPIEHGTVTNWDDMEKIWHHTYYNELRVAP-EEHPVLLTEAPLNPKTNREKMTQIMFETFNVPAFHVSIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGFSLPHAIQRLDLAGRDLTERLVLHL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_PHYIN (Actin-1 OS=Phytophthora infestans GN=ACTA PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 71/191 (37.17%), Postives = 94/191 (49.21%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++A VVD GS + KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +GC +D G G     P+ EG     A  R ++ G DLT  + + L
Sbjct:    6 VQALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPKHLGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_AJECG (Actin OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=HCBG_08711 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 70/194 (36.08%), Postives = 96/194 (49.48%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            ++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q++FETFN   FY S QAVLSLYA GR +G  +D G G   + P+ EG     A  R ++ G DLT  L + L +
Sbjct:    4 EVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPINPKSNREKMTQIVFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFALPHAISRIDMAGRDLTNYLMKILAE 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTC_STYPL (Actin, cytoplasmic OS=Styela plicata PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 72/192 (37.50%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A VVD GS + KAG A  D AP  V PS + R    G     V   + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    4 EVAALVVDNGSGMCKAGFA-EDDAPRAVFPSIVGRPRHQGVMVGMVQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTRAMYVNIQAVLSLYASGRTTGLVMDSGDGVSHTVPIYEGYALPHAIFRLDLAGRDLTDYLMKIL 193          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT1_SCHCO2.682e-2236.98Actin-1 OS=Schizophyllum commune GN=ACT1 PE=2 SV=1[more]
ACT1_NAEGR2.682e-2237.50Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1[more]
ACT_YEAST4.575e-2235.90Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=... [more]
ACT_SACBA4.575e-2235.90Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1[more]
ACT_ENCCU4.575e-2238.30Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE... [more]
ACT_CANGA4.575e-2235.90Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1[more]
ACT2_SCHCO4.575e-2236.46Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1[more]
ACT1_PHYIN4.575e-2237.17Actin-1 OS=Phytophthora infestans GN=ACTA PE=2 SV=... [more]
ACT_AJECG5.975e-2236.08Actin OS=Ajellomyces capsulata (strain ATCC 26029 ... [more]
ACTC_STYPL5.975e-2237.50Actin, cytoplasmic OS=Styela plicata PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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