FC868968 | Citrus Genome Database

Homology

BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP7_ARATH (Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.703e-93
Identity = 166/203 (81.77%), Postives = 188/203 (92.61%), Query Frame = 1

Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLV-EDVTMDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFS 684
            MEA VVDAGSK LKAG AIPDQ+P+M+IPSQMKR+++DGSSS DN T V EDVT+DP+ RG IRDWDAMEDLL +V+Y GLGWEEGNEG ILFTDPLC+PKA+REQLVQLMFETFN+SGFY+SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIAS+RFE+GG +LTKL AQELGKTNPS+NLS+ DVEKLKEQ++
Sbjct:    1 MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTELTKLFAQELGKTNPSMNLSMSDVEKLKEQYA 203

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BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSJ (Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.021e-78
Identity = 144/202 (71.29%), Postives = 176/202 (87.13%), Query Frame = 1

Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTMDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFS 684
            MEA VVDAGSKLLKAG A+PDQ+PS+V+PS+MK  +EDG   + +  +VE+V + PVVRGF++DWDAMEDLL++VLY+ +GWE G+EGQILFT+PL +PKA+REQL QLMFE FN+SGFY SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV EGAVQHIAS+RF++GG DLT L A+EL K+N SVN+ + DVE+LKEQ++
Sbjct:    1 MEAVVVDAGSKLLKAGIALPDQSPSLVMPSKMKLEVEDGQ--MGDGAVVEEV-VQPVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFYDSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTNLFAEELKKSNSSVNIDISDVERLKEQYA 199

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BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSI (Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.021e-78
Identity = 144/202 (71.29%), Postives = 176/202 (87.13%), Query Frame = 1

Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTMDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFS 684
            MEA VVDAGSKLLKAG A+PDQ+PS+V+PS+MK  +EDG   + +  +VE+V + PVVRGF++DWDAMEDLL++VLY+ +GWE G+EGQILFT+PL +PKA+REQL QLMFE FN+SGFY SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV EGAVQHIAS+RF++GG DLT L A+EL K+N SVN+ + DVE+LKEQ++
Sbjct:    1 MEAVVVDAGSKLLKAGIALPDQSPSLVMPSKMKLEVEDGQ--MGDGAVVEEV-VQPVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFYDSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTNLFAEELKKSNSSVNIDISDVERLKEQYA 199

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BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_ASPOR (Actin OS=Aspergillus oryzae GN=act1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 72/199 (36.18%), Postives = 98/199 (49.25%), Query Frame = 1

Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS 648
            A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  +  L      E  +L T+   +PK+ RE++ Q+MFETFN+  FY S QAVLSLYA GR +G  +D G G   + P+ EG     A  R ++ G DLT+ L + L +   S   S
Sbjct:    7 AIVIDNGSGMCKAGFA-GDDAPRAVFPSLIGRPRHHGIIVGMGQKDSYVGDEAQSKRGVLSLHYPIEHGIVNNWDDMEKIWHHTYFNELR-VASEEHPVLLTEAPINPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGFSMPHAIARMDLAGRDLTEYLVRILAERGHSFTTS 203

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BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_FUCVE (Actin OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 71/191 (37.17%), Postives = 94/191 (49.21%), Query Frame = 1

Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++A VVD GS + KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA +E++ Q+MFETFN+   Y + QAVLSLYA GR +GC +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    6 VQALVVDNGSGMCKAGFA-RDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANKERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAINRLDLAGRDLTDNLMKVL 194

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BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_COPC7 (Actin OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 72/194 (37.11%), Postives = 96/194 (49.48%), Query Frame = 1

Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            ++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN   FY + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + LG+
Sbjct:    4 EVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGFALPHAILRLDLAGRDLTDYLIKCLGE 195

[Close]

BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_TRIRE (Actin OS=Trichoderma reesei GN=act PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 72/194 (37.11%), Postives = 96/194 (49.48%), Query Frame = 1

Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            ++ A V+D GS + KAG A  D AP  V PS   R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MFETFN   FY S QAVLSLYA GR +G  +D G G   + P+ EG     A RR ++ G DLT  L + L +
Sbjct:    4 EVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIDGRSRHHGIMIGMGQKDSYVGDEAQSKRGILTLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPINPKSNREKMTQIMFETFNAPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTTVVPIYEGFALPHAIRRVDMAGRDLTDYLMKILAE 195

[Close]

BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_ACHBI (Actin OS=Achlya bisexualis PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 71/191 (37.17%), Postives = 94/191 (49.21%), Query Frame = 1

Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++A VVD GS + KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +GC +D G G     P+ EG     A  R ++ G DLT  + + L
Sbjct:    6 VQALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKIL 194

[Close]

BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_PICPG (Actin OS=Pichia pastoris (strain GS115) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 70/191 (36.65%), Postives = 94/191 (49.21%), Query Frame = 1

Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MFETFN+  FY S QAVLSLYA GR +G  +D G G   + P+  G     A  R ++ G DLT  L + L +
Sbjct:    8 ALVIDNGSGMCKAGYA-GDDAPHTVFPSVVGRPRHQGVMVGMGQKDSFVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRLAP-EEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYASGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSE 196

[Close]

BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_SUIBO (Actin-2 OS=Suillus bovinus GN=ACT2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 72/192 (37.50%), Postives = 94/192 (48.96%), Query Frame = 1

Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN   FY S QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    4 EVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAFYVSIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGFSLPHAILRLDLAGRDLTDCLIKNL 193

The following BLAST results are available for this feature:

BLAST of FC868968 vs. ExPASy Swiss-Prot

BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
ARP7_ARATH	1.703e-93	81.77	Actin-related protein 7 OS=Arabidopsis thaliana GN...	[more]
ARP7_ORYSJ	2.021e-78	71.29	Actin-related protein 7 OS=Oryza sativa subsp. jap...	[more]
ARP7_ORYSI	2.021e-78	71.29	Actin-related protein 7 OS=Oryza sativa subsp. ind...	[more]
ACT_ASPOR	2.426e-23	36.18	Actin OS=Aspergillus oryzae GN=act1 PE=3 SV=1	[more]
ACT_FUCVE	1.572e-22	37.17	Actin OS=Fucus vesiculosus PE=2 SV=1	[more]
ACT_COPC7	1.572e-22	37.11	Actin OS=Coprinopsis cinerea (strain Okayama-7 / 1...	[more]
ACT_TRIRE	2.054e-22	37.11	Actin OS=Trichoderma reesei GN=act PE=3 SV=1	[more]
ACT_ACHBI	2.054e-22	37.17	Actin OS=Achlya bisexualis PE=3 SV=1	[more]
ACT_PICPG	2.682e-22	36.65	Actin OS=Pichia pastoris (strain GS115) GN=ACT1 PE...	[more]
ACT2_SUIBO	2.682e-22	37.50	Actin-2 OS=Suillus bovinus GN=ACT2 PE=2 SV=1	[more]

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Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA