FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_ASHGO (Actin OS=Ashbya gossypii GN=ACT1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 68/194 (35.05%), Postives = 96/194 (49.48%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            ++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE++ Q+MFETFN+  FY S QAVLSLY+ GR +G  +D G G   + P+  G     A  R ++ G D+T  L + L +
Sbjct:    5 EVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDMTDYLMKILSE 196          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTS_CARAU (Actin, alpha skeletal muscle OS=Carassius auratus GN=acta1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 73/192 (38.02%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A V D GS L+KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     PV EG     A  R ++ G DLT  L + L
Sbjct:    6 EVTALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDAGDGVTHNVPVYEGYALPHAIMRLDLAGRDLTDYLMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_SACKO (Actin-2 OS=Saccoglossus kowalevskii PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 71/192 (36.98%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 EVAALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDTGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_MOLOC (Actin, muscle-type OS=Molgula oculata PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 72/189 (38.10%), Postives = 92/189 (48.68%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L+KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   10 ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 196          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_DIPDE (Actin-1/4 OS=Diphyllobothrium dendriticum GN=ACT1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 71/192 (36.98%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            +++A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y   QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 EVQALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQAVLSLYASGRTTGIVLDSGDGVTHSVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_ACACA (Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 70/192 (36.46%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            +++A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    4 EVQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_TOXGO (Actin OS=Toxoplasma gondii GN=ACT1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 68/192 (35.42%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            +++A VVD GS  +KAG A  D AP  V PS + +    G      +    V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLY+ GR +G  +D G G     P+ EG     A  R ++ G DLT+ + + L
Sbjct:    5 EVQALVVDNGSGNVKAGVA-GDDAPRAVFPSIVGKPKNPGIMVGMEEKDCYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVAIQAVLSLYSSGRTTGIVLDSGDGVSHTVPIYEGYALPHAIMRLDLAGRDLTEYMMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_PLAMG (Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 71/192 (36.98%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 EVAALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_HISCA (Actin OS=Histriculus cavicola PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 74/217 (34.10%), Postives = 114/217 (52.53%), Query Frame = 1
Query:   70 VSKMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSS-SVDNST--LVEDVTMD--------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS--LYDVEKLKEQ 678
            +S+ +  V+D GS ++KAG +  D AP  V PS + R     +   VD+++  L ++            P+  G ++DWD ME + +H  Y  L     +E  +L T+   +PK  RE++ Q+MFETFN+   Y + QAVLSLY+ GR +G   D G G     P+ EG ++ H  S R ++ G DLT  +A+ L +   S   S  L  V  +KE+
Sbjct:    1 MSEQQTCVIDNGSGVVKAGFSGED-APRAVYPSIVGRPKNVSALIGVDSASEYLGDEAQQKRGVLKIFYPIEHGIVKDWDDMEKIWNHTFYVELRVSP-DEHPVLLTEAPLNPKVNREKMTQIMFETFNVPALYVAIQAVLSLYSAGRTTGIVCDAGDGVTHTVPIYEGFSIPHAVS-RIQLAGRDLTTFMAKLLTERGYSFTSSAELEIVRDIKEK 214          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_CYAME (Actin OS=Cyanidioschyzon merolae PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 69/192 (35.94%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A V+D GS ++KAG A  D AP  V PS + R              + V D             P+  G + +WD ME + +H  Y  L      +  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  VD G G     P+ EG     A  R ++ G DLT  LA+ L
Sbjct:    5 EITALVIDNGSGMVKAGFA-GDDAPRAVFPSIVGRPRHQAVMVGMGQKDSYVGDEAQSKRGILSLKYPIEHGIVTNWDDMEKIWYHTFYNELRISP-EDHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVVDSGDGVTHTVPIYEGYALPHAIMRIDLAGRDLTDYLAKIL 194          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT_ASHGO2.271e-2135.05Actin OS=Ashbya gossypii GN=ACT1 PE=2 SV=1[more]
ACTS_CARAU2.271e-2138.02Actin, alpha skeletal muscle OS=Carassius auratus ... [more]
ACT2_SACKO2.271e-2136.98Actin-2 OS=Saccoglossus kowalevskii PE=2 SV=1[more]
ACT2_MOLOC2.271e-2138.10Actin, muscle-type OS=Molgula oculata PE=3 SV=1[more]
ACT1_DIPDE2.271e-2136.98Actin-1/4 OS=Diphyllobothrium dendriticum GN=ACT1 ... [more]
ACT1_ACACA2.271e-2136.46Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1[more]
ACT_TOXGO2.965e-2135.42Actin OS=Toxoplasma gondii GN=ACT1 PE=3 SV=1[more]
ACT_PLAMG2.965e-2136.98Actin, adductor muscle OS=Placopecten magellanicus... [more]
ACT_HISCA2.965e-2134.10Actin OS=Histriculus cavicola PE=3 SV=2[more]
ACT_CYAME2.965e-2135.94Actin OS=Cyanidioschyzon merolae PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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