FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 38/134 (28.36%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNL 645
            P+  G + DWDA+E L   ++  GL      +  +L +D   +P   RE++ +L+FE   +   + +  A+L+L ++G  SG  V+ G G     P+  G   H A+ R  V G  L++     L    P + L
Sbjct:   38 PIKHGVVVDWDALEGLWERLMVGGL-QVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQL 170          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP3_NEUCR (Actin-related protein 3 OS=Neurospora crassa GN=arp-3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 45/154 (29.22%), Postives = 74/154 (48.05%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV--------GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQF 681
            P+  G I +WD ME    + ++  L  E   +   L T+P  +P   RE   ++ FE+FN +G Y + QAVL+L A           ++G  +D G G   + PV EG V   + +   + G D+T    Q L +     + SL   +++KE++
Sbjct:  102 PIRHGQIENWDHMERFWSNSIFKYLRVEP-EDHHFLLTEPPLNPPENRENTAEIFFESFNCAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGDGVTHVIPVAEGYVIGSSIKSIPIAGRDIT-YFVQSLLRDRGEPDSSLKTAQEIKEEY 253          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
CT134_MOUSE8.094e-1128.36Putative uncharacterized actin family protein C20o... [more]
ARP3_NEUCR8.094e-1129.22Actin-related protein 3 OS=Neurospora crassa GN=ar... [more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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