FC869020

Overview
NameFC869020
Unique NameFC869020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869020_ssr37 microsatellite FC869020_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9447 contig Ccv1_Contig9447:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_NEUCR (Ribonuclease H2 subunit A OS=Neurospora crassa GN=rnh-201 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.835e-35
Identity = 85/198 (42.93%), Postives = 117/198 (59.09%), Query Frame = 1
Query:   82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 645
            + PC +G+DEAGRGPVLGPMVY   Y P +    L     +F DSK L    R  L ++L     +++D+ G+A   + P  +S+ ML  +K    NLN+ + D+ I LI  +   GV +T++++DT+G    YQ KL + FP+ K  V+KKADSLYPVVS AS+VAKVTRD  L     + T       +GSGYP D
Sbjct:   41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKELCTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIALEVLWADRTMA-----WGSGYPSD 233          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METMP (Ribonuclease HII OS=Methanococcus maripaludis GN=rnhB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 72/201 (35.82%), Postives = 107/201 (53.23%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETRXG*QIITHYIW 690
            I+G+DEAGRGPVLGPMV   +         L  L   DSK L ++KREEL+  + +N+       +IDP  +  +M  +N NKI L+  S  S    I    NI + +          + +++AKL  +  +++ +   KAD  Y +VS ASI+AKVTRDR     + EE  E      GSGYP DP+T+   + + +Y++
Sbjct:   23 IVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELY--IIINEMCDVEKIVIDPETIDKQMEIINLNKIELSAFSKLSN-HFIRENDNISIYIDACSSSEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-----VIEEYKETF-GEIGSGYPSDPKTK---KFLKNYVY 209          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THEVO (Ribonuclease HII OS=Thermoplasma volcanium GN=rnhB PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 68/185 (36.76%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            GIDEAGRGPV+GPMV   + C   Y   L  +   DSK L  ++RE LF+  K+  +  ++  ++ P  L+  M +++   LN+I  +  + L+++   I      VY+D     E+   K  +     + V   KADS+YP VS ASIV+KV RDR +     ++ AE  +  FGSGYP DP T
Sbjct:    8 GIDEAGRGPVIGPMVISIVCCKEEY---LREIGVKDSKMLSRKRREYLFD--KITKNCAYSYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEERAEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSGYPSDPRT 172          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METM7 (Ribonuclease HII OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rnhB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 67/190 (35.26%), Postives = 103/190 (54.21%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            I+G+DEAGRGPV+GPMV   +    +    L  L   DSK L ++KREEL+  +K+++       +IDP ++  +M  +N NKI L   S   A   I    NI + +     +    + +++AKL  +  +++ +   KAD  Y +VS ASI+AKVTRD  +      E  + +    GSGYP DP+T+
Sbjct:   20 IVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELY--IKISEICDVKKIVIDPEKIDEQMEIINLNKIELGAFSK-LANHFIKENENISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKEIFGEIGSGYPSDPKTK 198          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THEAC (Ribonuclease HII OS=Thermoplasma acidophilum GN=rnhB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 66/185 (35.68%), Postives = 98/185 (52.97%), Query Frame = 1
Query:  100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            GIDEAGRGPV+GPMV   + C  S+   L  +   DSK L  ++R ELFE +    SV +   I+ P++L+  M  +   +LN+I  D  + L+    ++      VY+D     E+   ++ Q     + V   KAD+++P VS ASIV+KV RD  +      +   +   +FGSGYP DP T
Sbjct:    9 GIDEAGRGPVIGPMVISLVCCDLSF---LKEIRVKDSKALTRKRRSELFEKIMGRCSVRYR--ILHPKDLNRMMAAE---SLNKIEEDEIVDLLRYADDL------VYIDCYDVIEERAQEIIQMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEI------DRLHDRFGDFGSGYPSDPRT 173          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_UNCMA (Ribonuclease HII OS=Uncultured methanogenic archaeon RC-I GN=rnhB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 68/189 (35.98%), Postives = 101/189 (53.44%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            IMGIDEAGRGPV+GP+V   +         +  +   DSK L  +KREE    LK  +   + + ++ P+E+ A+  +++  NLN +  +   GLI          T  YLD    +AE++   + +     ++ V + +ADS YP+VS ASI+AKV RD  +R     E +E M  + GSGYP DP T
Sbjct:    9 IMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAALK--NKYKYELSVLPPQEIDARFESED--NLNRLEVNCFAGLIRSAKP-----TIAYLDACDVNAERFGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIR-----EISEKMGEDVGSGYPADPVT 183          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METM6 (Ribonuclease HII OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rnhB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 67/194 (34.54%), Postives = 101/194 (52.06%), Query Frame = 1
Query:   82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            S   I+G+DEAGRGPV+GPMV   +         L  L   DSK L ++KREEL+  +K+++       +I P ++  +M   N NKI L+  S   A   I    NI + +     +    + +++AKL  +  +++ +   KAD  Y +VS ASI+AKVTRD  +      E  +      GSGYP DP+T+
Sbjct:   16 SGKIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELY--VKISEICNVKKIVIAPEKIDEQMEITNLNKIELSAFS-KLANHFIKENENISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTFGEIGSGYPSDPKTK 198          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METJA (Ribonuclease HII OS=Methanocaldococcus jannaschii GN=rnhB PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 73/202 (36.14%), Postives = 108/202 (53.47%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGVLLTEVYLDTVGD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            I+GIDEAGRGPVLGPMV          ++ L  L   DSK L + KR  L    K+ +++G+    ++ R L A+ +N+  N INLN+I  ++    A  LI + LNI     E+Y+D              +K +  + +R  +IK +   KAD+ YPVVS ASI+AK  RD  +      +  + ++ + GSGYP DP+T
Sbjct:    3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL---KKLLENLGY----VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK-LNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEII------DYYKKIYGDIGSGYPSDPKT 190          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METM5 (Ribonuclease HII OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rnhB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            I+G+DEAGRGPV+GPMV   +         L  L   DSK L ++KREEL+   K+++       +I+P ++  +M  +N NKI L   S   A   I    NI + +     +    + +++AKL  +  +++ +   KAD  Y +VS ASI+AKVTRD  +      E  +      GSGYP DP+T+
Sbjct:   20 IVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELYT--KISEICDVKKVVINPEKIDEQMEIINLNKIELGAFSK-LANHFIKENENISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTFGEIGSGYPSDPKTK 198          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PYRKO (Ribonuclease HII OS=Pyrococcus kodakaraensis GN=rnhB PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 72/191 (37.70%), Postives = 100/191 (52.36%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGVLLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            I GIDEAGRGPV+GPMV   +    +    L  L   DSK L  ++RE+LF     N+ +G   D +   EL   ++   +  LNE   ++      + LN + V    +Y D    D E++  +L +R      VV+K KAD ++PVVS ASI+AKVTRDR +      E  +  +   GSGYP DP TR
Sbjct:    3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEILGVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEIGSGYPSDPRTR 177          
The following BLAST results are available for this feature:
BLAST of FC869020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RNH2A_NEUCR4.835e-3542.93Ribonuclease H2 subunit A OS=Neurospora crassa GN=... [more]
RNH2_METMP3.043e-2135.82Ribonuclease HII OS=Methanococcus maripaludis GN=r... [more]
RNH2_THEVO3.974e-2136.76Ribonuclease HII OS=Thermoplasma volcanium GN=rnhB... [more]
RNH2_METM76.779e-2135.26Ribonuclease HII OS=Methanococcus maripaludis (str... [more]
RNH2_THEAC1.510e-2035.68Ribonuclease HII OS=Thermoplasma acidophilum GN=rn... [more]
RNH2_UNCMA3.364e-2035.98Ribonuclease HII OS=Uncultured methanogenic archae... [more]
RNH2_METM67.495e-2034.54Ribonuclease HII OS=Methanococcus maripaludis (str... [more]
RNH2_METJA7.495e-2036.14Ribonuclease HII OS=Methanocaldococcus jannaschii ... [more]
RNH2_METM59.788e-2034.74Ribonuclease HII OS=Methanococcus maripaludis (str... [more]
RNH2_PYRKO1.670e-1937.70Ribonuclease HII OS=Pyrococcus kodakaraensis GN=rn... [more]

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Properties
Property NameValue
Genbank descriptionC31007F08EF AbioticL1 Citrus clementina cDNA clone C31007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869020 ID=FC869020; Name=FC869020; organism=Citrus clementina; type=EST; length=693bp
GATTTTAGGATTCAATCCAAATCAGCCAATTCAGATAGAGAGAGAGTTAT
GGGATCGGAAGCAGCTCTTCCCAAATGGGCTTCAAATCCTTGTATTATGG
GCATCGACGAAGCTGGCCGTGGCCCCGTTTTAGGACCCATGGTGTACGGA
TGCTTGTACTGTCCCTGTTCCTATCAGCAGACTCTTGCTACCTTGAATTT
TGCAGATTCAAAAACACTAAAGGAAGAGAAGCGGGAGGAATTATTTGAGG
ATTTGAAGGTTAATGACTCTGTTGGGTGGGCTGTAGATATTATAGATCCT
AGGGAGCTCTCAGCTAAGATGCTTAATAAAAATAAGATAAACCTGAATGA
GATTTCACATGACTCAGCAATTGGCCTGATCACAAGGGTACTAAACATAG
GAGTTCTTCTAACTGAGGTTTATTTGGATACGGTGGGAGATGCTGAGAAG
TACCAAGCAAAACTTTCTCAGAGATTTCCTTCCATCAAATTTGTTGTATC
AAAGAAGGCTGACAGTCTCTATCCAGTTGTTAGTGGTGCAAGCATAGTTG
CGAAGGTCACTAGAGATCGAACTTTGAGAGGATGGATATTTGAGGAAACA
GCTGAAAATATGCATCGGAACTTTGGTTCTGGATATCCTGGAGATCCTGA
AACCAGGNCTGGTTGACAGATCATAACACATTATATTTGGATT
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