FC869020
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_NEUCR (Ribonuclease H2 subunit A OS=Neurospora crassa GN=rnh-201 PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.835e-35 Identity = 85/198 (42.93%), Postives = 117/198 (59.09%), Query Frame = 1 Query: 82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD 645 + PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L +++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + GV +T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L + T +GSGYP D Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKELCTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIALEVLWADRTMA-----WGSGYPSD 233
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METMP (Ribonuclease HII OS=Methanococcus maripaludis GN=rnhB PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21 Identity = 72/201 (35.82%), Postives = 107/201 (53.23%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETRXG*QIITHYIW 690 I+G+DEAGRGPVLGPMV + L L DSK L ++KREEL+ + +N+ +IDP + +M +N NKI L+ S S I NI + + + +++AKL + +++ + KAD Y +VS ASI+AKVTRDR + EE E GSGYP DP+T+ + + +Y++ Sbjct: 23 IVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELY--IIINEMCDVEKIVIDPETIDKQMEIINLNKIELSAFSKLSN-HFIRENDNISIYIDACSSSEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-----VIEEYKETF-GEIGSGYPSDPKTK---KFLKNYVY 209
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THEVO (Ribonuclease HII OS=Thermoplasma volcanium GN=rnhB PE=3 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21 Identity = 68/185 (36.76%), Postives = 100/185 (54.05%), Query Frame = 1 Query: 100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654 GIDEAGRGPV+GPMV + C Y L + DSK L ++RE LF+ K+ + ++ ++ P L+ M +++ LN+I + + L+++ I VY+D E+ K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSGYP DP T Sbjct: 8 GIDEAGRGPVIGPMVISIVCCKEEY---LREIGVKDSKMLSRKRREYLFD--KITKNCAYSYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEERAEKYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSGYPSDPRT 172
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METM7 (Ribonuclease HII OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rnhB PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21 Identity = 67/190 (35.26%), Postives = 103/190 (54.21%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 I+G+DEAGRGPV+GPMV + + L L DSK L ++KREEL+ +K+++ +IDP ++ +M +N NKI L S A I NI + + + + +++AKL + +++ + KAD Y +VS ASI+AKVTRD + E + + GSGYP DP+T+ Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELY--IKISEICDVKKIVIDPEKIDEQMEIINLNKIELGAFSK-LANHFIKENENISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKEIFGEIGSGYPSDPKTK 198
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THEAC (Ribonuclease HII OS=Thermoplasma acidophilum GN=rnhB PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20 Identity = 66/185 (35.68%), Postives = 98/185 (52.97%), Query Frame = 1 Query: 100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654 GIDEAGRGPV+GPMV + C S+ L + DSK L ++R ELFE + SV + I+ P++L+ M + +LN+I D + L+ ++ VY+D E+ ++ Q + V KAD+++P VS ASIV+KV RD + + + +FGSGYP DP T Sbjct: 9 GIDEAGRGPVIGPMVISLVCCDLSF---LKEIRVKDSKALTRKRRSELFEKIMGRCSVRYR--ILHPKDLNRMMAAE---SLNKIEEDEIVDLLRYADDL------VYIDCYDVIEERAQEIIQMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEI------DRLHDRFGDFGSGYPSDPRT 173
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_UNCMA (Ribonuclease HII OS=Uncultured methanogenic archaeon RC-I GN=rnhB PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20 Identity = 68/189 (35.98%), Postives = 101/189 (53.44%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654 IMGIDEAGRGPV+GP+V + + + DSK L +KREE LK + + + ++ P+E+ A+ +++ NLN + + GLI T YLD +AE++ + + ++ V + +ADS YP+VS ASI+AKV RD +R E +E M + GSGYP DP T Sbjct: 9 IMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAALK--NKYKYELSVLPPQEIDARFESED--NLNRLEVNCFAGLIRSAKP-----TIAYLDACDVNAERFGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIR-----EISEKMGEDVGSGYPADPVT 183
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METM6 (Ribonuclease HII OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rnhB PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20 Identity = 67/194 (34.54%), Postives = 101/194 (52.06%), Query Frame = 1 Query: 82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 S I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ +K+++ +I P ++ +M N NKI L+ S A I NI + + + + +++AKL + +++ + KAD Y +VS ASI+AKVTRD + E + GSGYP DP+T+ Sbjct: 16 SGKIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELY--VKISEICNVKKIVIAPEKIDEQMEITNLNKIELSAFS-KLANHFIKENENISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTFGEIGSGYPSDPKTK 198
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METJA (Ribonuclease HII OS=Methanocaldococcus jannaschii GN=rnhB PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20 Identity = 73/202 (36.14%), Postives = 108/202 (53.47%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGVLLTEVYLDTVGD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654 I+GIDEAGRGPVLGPMV ++ L L DSK L + KR L K+ +++G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI E+Y+D +K + + +R +IK + KAD+ YPVVS ASI+AK RD + + + ++ + GSGYP DP+T Sbjct: 3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL---KKLLENLGY----VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK-LNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEII------DYYKKIYGDIGSGYPSDPKT 190
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METM5 (Ribonuclease HII OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rnhB PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20 Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ K+++ +I+P ++ +M +N NKI L S A I NI + + + + +++AKL + +++ + KAD Y +VS ASI+AKVTRD + E + GSGYP DP+T+ Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELYT--KISEICDVKKVVINPEKIDEQMEIINLNKIELGAFSK-LANHFIKENENISIYIDACSSNEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTFGEIGSGYPSDPKTK 198
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PYRKO (Ribonuclease HII OS=Pyrococcus kodakaraensis GN=rnhB PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19 Identity = 72/191 (37.70%), Postives = 100/191 (52.36%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGVLLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +G D + EL ++ + LNE ++ + LN + V +Y D D E++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR + E + + GSGYP DP TR Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEILGVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEIGSGYPSDPRTR 177 The following BLAST results are available for this feature:
BLAST of FC869020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869020 ID=FC869020; Name=FC869020; organism=Citrus clementina; type=EST; length=693bpback to top |