FC869020
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_ARATH (Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2 SV=2) HSP 1 Score: 332.798 bits (852), Expect = 1.060e-90 Identity = 158/203 (77.83%), Postives = 184/203 (90.64%), Query Frame = 1 Query: 49 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 M SE P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEEKREEL+E LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++GVLLTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+ EET E+++RNFGSGYPGDPET+ Sbjct: 1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETK 203
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_DROME (Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690 PE=2 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 2.913e-56 Identity = 111/204 (54.41%), Postives = 137/204 (67.16%), Query Frame = 1 Query: 88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETRXG*QIITHYI 687 PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ + VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ GV + EVY+DTVG EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E FGSGYPGDP TR + +T YI Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTR---RFLTEYI 270
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_RAT (Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.599e-54 Identity = 102/191 (53.40%), Postives = 135/191 (70.68%), Query Frame = 1 Query: 88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ + D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ V +T+V++DTVG E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++GSGYP DP+T+ Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTK 218
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_HUMAN (Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2) HSP 1 Score: 211.46 bits (537), Expect = 3.561e-54 Identity = 101/190 (53.16%), Postives = 132/190 (69.47%), Query Frame = 1 Query: 88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ GV +T+V++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSGYP DP+T+ Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTK 217
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_MOUSE (Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2) HSP 1 Score: 209.149 bits (531), Expect = 1.767e-53 Identity = 101/191 (52.88%), Postives = 133/191 (69.63%), Query Frame = 1 Query: 88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ + D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ V +T+V++DTVG E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++GSGYP DP+T+ Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTK 218
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_BOVIN (Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53 Identity = 100/197 (50.76%), Postives = 135/197 (68.53%), Query Frame = 1 Query: 70 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 P PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R+ LF ++ + D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ GV + +V++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++GSGYP DP+T+ Sbjct: 22 PVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSGYPNDPKTK 218
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_DICDI (Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2a PE=3 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 4.981e-48 Identity = 104/196 (53.06%), Postives = 131/196 (66.84%), Query Frame = 1 Query: 82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-----ETAENMHRNFGSGYPGDP 648 S P +MGIDEAGRGPV+GPMVYGC Y P S TL ++ F DSK L E++R++LF+ + + N + + D+I LS KML K I+LN ISH+SAIGLI VL GV + E+YLDTVG +KYQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F+ + E + +FGSGYP DP Sbjct: 18 SEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGESNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVGPPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQLSTDFGSGYPSDP 213
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_CAEEL (Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.154e-45 Identity = 95/195 (48.72%), Postives = 121/195 (62.05%), Query Frame = 1 Query: 88 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENMHRNFGSGYPGDPETR 657 PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+F ED + + +A+ + P +S ML + K +LNE+SH++AI LI L V + E+ +DTVG YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F E+ + +GSGYPGDP T+ Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNEDEDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVPDAGYGSGYPGDPNTK 215
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_SCHPO (Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe GN=rnh201 PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40 Identity = 98/198 (49.49%), Postives = 122/198 (61.62%), Query Frame = 1 Query: 82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RNFGSGYPGDPET 654 S P +G+DEAGRGPVLGPMVY YCP + L FADSKTL KREEL + + ++ +VGW+ I REL+A ML +NK NLN +HD+ I LI +V G+ +TE+Y+DTVG YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L E E++ N+GSGY D T Sbjct: 61 SQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD--LTNYGFADSKTLASLKREELLKLICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL-----ECARESIRTENWGSGYSSDART 251
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2A_YEAST (Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae GN=RNH201 PE=1 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36 Identity = 95/207 (45.89%), Postives = 118/207 (57.00%), Query Frame = 1 Query: 61 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELF----EDLKVNDSVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654 +AL + +P IMGIDEAGRGPVLGPMVY Y YQ N F DSK L + R LF +D + +G+A I P ++S +K NLNE +HD + LI V+ V L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD + E + GSGYP DP+T Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-----ILVESLKRDPDEILGSGYPSDPKT 225 The following BLAST results are available for this feature:
BLAST of FC869020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869020 ID=FC869020; Name=FC869020; organism=Citrus clementina; type=EST; length=693bpback to top |