FC869020

Overview
NameFC869020
Unique NameFC869020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869020_ssr37 microsatellite FC869020_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9447 contig Ccv1_Contig9447:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_HYPBU (Ribonuclease HII OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rnhB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 67/187 (35.83%), Postives = 98/187 (52.41%), Query Frame = 1
Query:   97 MGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            +GIDEAGRGPV+GPMV  G   C     + +A L   DSK L    R +L+ ++ +  ++   +  + P  L A       +NLN++  ++   + +R+  +      VY+D VG  EK  A+LS R   ++ +    AD  YP+VS ASIVAKV RD  +R          ++   GSGYP DPET
Sbjct:   10 IGIDEAGRGPVIGPMVVVGVAVCSNDIDKLVA-LGVRDSKQLTPVVRAKLYGEI-LRVALHSVIVKLPPALLDA-------VNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEKLAARLSGRL-GVRVIAEPGADKTYPIVSAASIVAKVVRDAEIR------MLRRLYGVRGSGYPTDPET 180          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_META3 (Ribonuclease HII OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rnhB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 73/213 (34.27%), Postives = 100/213 (46.95%), Query Frame = 1
Query:   82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVL-------------NIGVLLTEVYLDTVGDAEKYQAK------LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            +N  I+G+DEAGRGPVLGPMV   +       +    L+  DSK   + +REELFE +  N  V + +       L AK ++K  N INLN+I   +   LI  VL                    E+Y+D     EK  A       +     +IK +   KAD  Y +VS ASI+AKV RDR +      E  + ++   GSGYP D  T+
Sbjct:   18 NNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMIINNYDVRYEI-------LEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQTATPQIEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRKI------EEYKKIYGEIGSGYPSDKITQ 217          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PYRAB (Ribonuclease HII OS=Pyrococcus abyssi GN=rnhB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 64/191 (33.51%), Postives = 104/191 (54.45%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            + G DEAGRGPV+GP+V           ++L  L   DSK L   +RE+LF+++ KV D   ++V I+ P+++  +     K ++NE+  ++ +  +    ++ V    +Y+D+    AE++   +  R     K V   KAD+ Y +VS ASI+AKV RDR +      E  +  + +FGSGYP DP T+
Sbjct:    3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD--YSVVIVSPQDIDGR-----KGSMNELEVENFVKALN---SLKVKPEVIYIDSADVKAERFAENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREI------EKLKAEYGDFGSGYPSDPRTK 177          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THESM (Ribonuclease HII OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rnhB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 66/192 (34.38%), Postives = 102/192 (53.12%), Query Frame = 1
Query:  100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDP---RELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGVLLTEVYLDTVG-DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            GIDEAGRGPV+GP+V   +    S  +    L   DSK L  +KREELFE +         ++++D     ELS + ++K +  +N+   ++      +VLN + +    VY+D    + E++   + ++     K +   KADS Y  V+ ASI+AKVTRD+ +      E  + ++ N GSGYP DP TR
Sbjct:    5 GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKI---------IELVDDYFILELSPEDIDKREGTMNDFEVEN----FAKVLNSLKIKPDLVYIDAADVNEERFGIVVREKLSFYPKIIAEHKADSKYIPVAAASILAKVTRDKAI------ERLKEIYGNIGSGYPSDPITR 177          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METMA (Ribonuclease HII OS=Methanosarcina mazei GN=rnhB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 70/197 (35.53%), Postives = 101/197 (51.27%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            I GIDEAG+GPV+GPM  G +    S    L  L  ADSK L  +KRE+L   +K   + G+ +  + P ++      +  +++NEI     +    +VL   +    VY D     AE++   L +++          IK V   +AD++YPVVS ASI+AKV RD      + EE       +FGSGYP DP+TR
Sbjct:    3 IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIK-KHADGYFIFEVSPSQIDEL---RKIMSMNEI----MVVCFAKVLE-QLKPDIVYADAADVKAERFAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDE-----LIEELKREWCIDFGSGYPSDPKTR 185          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_NANEQ (Ribonuclease HII OS=Nanoarchaeum equitans GN=rnhB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 63/186 (33.87%), Postives = 96/186 (51.61%), Query Frame = 1
Query:  100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            G+DEAGRGP++GPMV   +     Y   L  L   DSK L +E+REELF ++  N  V +  +I+ P  +       ++ NLNE+       LI    +I   ++ + +D+    E Y+ ++ +       +++K      P+V+ ASIVAKV RDR +     E+  E    +FGSGYP D  TR
Sbjct:    5 GVDEAGRGPIIGPMVIALVIGDSGY---LKELGVKDSKLLTKEQREELFNEIVKNSLVKY--EIVSPSLI-------DRYNLNELEAKVTANLIN---SIEDEISHIVIDSPERPENYKLRILKYLKKRVKIITKNKGEEDPLVAAASIVAKVIRDREI-----EKIKEQTGIDFGSGYPSDKRTR 170          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METVS (Ribonuclease HII OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rnhB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 62/190 (32.63%), Postives = 98/190 (51.58%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS--AKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            I+G+DEAGRGPVLGPMV   +         + +L+  DSK L +++REE +    +N+       ++ P ++    K  N NKI L+  S  S    +    N+ + +            +++AKL  +   ++ +   KAD  Y +VS ASI+AKVTRD  +      E+ +    + GSGYPGDP+T+
Sbjct:   25 ILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYN--IINECFEVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSN-HFLKEYENVKIFIDACSSSEQSFLNQFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAKVTRDNII------ESYKEEFGDIGSGYPGDPKTK 203          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THEPD (Ribonuclease HII OS=Thermofilum pendens (strain Hrk 5) GN=rnhB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 67/194 (34.54%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVD--IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDA-----EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            + GIDEAGRGP+LGPMV   + CP      L  +   DSK L   +R  L   +    SVG +V   +++P+E+   +  +   NLN +       LI  VL+ G  L  VY+D+         E+ +A L  +   ++ V    AD  Y +V  ASIVAK TRD  +         +  + +FGSGYP DP T
Sbjct:    4 VAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAI---PSVGCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGE-LEVVYMDSPDPVPSRFEERVRALLKGQ---VRIVAENGADEKYTIVGAASIVAKETRDEII------NALKKTYGDFGSGYPSDPRT 184          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PYRFU (Ribonuclease HII OS=Pyrococcus furiosus GN=rnhB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 61/190 (32.11%), Postives = 96/190 (50.53%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            I GIDEAGRGP +GP+V   +       + L  +   DSK L   +R+ LF  +  + +  + + I+ P E+  +    N++ + + +      L    L I   L  +Y D    DA ++ + + +R     K +   KAD+ YPVVS ASI+AKV RD  +      E  +  + +FGSGYP DP+T+
Sbjct:    3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQI-TSIADDYKIVIVSPEEIDNRSGTMNELEVEKFA------LALNSLQIKPAL--IYADAADVDANRFASLIERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEI------EKLKKQYGDFGSGYPSDPKTK 177          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METAC (Ribonuclease HII OS=Methanosarcina acetivorans GN=rnhB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 68/197 (34.52%), Postives = 102/197 (51.78%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            I GIDEAG+GPV+GPM  G +    S    L  L  ADSK L  +KRE+L   +K   + G+ +  I P ++      +  +++NEI     +    +VL   +    VY D     AE++   L +++          I+ +   +AD++YPVVS ASI+AKV RD      + EE  +    +FGSGYP DP+T+
Sbjct:    3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIK-KHADGFFILEITPAQIDEL---RKIMSMNEI----MVICFAKVLE-QLKPDIVYADAADVKAERFAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDE-----LIEEIKKEWSVDFGSGYPSDPKTK 185          
The following BLAST results are available for this feature:
BLAST of FC869020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RNH2_HYPBU6.345e-1935.83Ribonuclease HII OS=Hyperthermus butylicus (strain... [more]
RNH2_META31.082e-1834.27Ribonuclease HII OS=Methanococcus aeolicus (strain... [more]
RNH2_PYRAB1.846e-1833.51Ribonuclease HII OS=Pyrococcus abyssi GN=rnhB PE=3... [more]
RNH2_THESM2.411e-1834.38Ribonuclease HII OS=Thermococcus sibiricus (strain... [more]
RNH2_METMA2.411e-1835.53Ribonuclease HII OS=Methanosarcina mazei GN=rnhB P... [more]
RNH2_NANEQ3.149e-1833.87Ribonuclease HII OS=Nanoarchaeum equitans GN=rnhB ... [more]
RNH2_METVS4.112e-1832.63Ribonuclease HII OS=Methanococcus vannielii (strai... [more]
RNH2_THEPD5.371e-1834.54Ribonuclease HII OS=Thermofilum pendens (strain Hr... [more]
RNH2_PYRFU9.162e-1832.11Ribonuclease HII OS=Pyrococcus furiosus GN=rnhB PE... [more]
RNH2_METAC1.197e-1734.52Ribonuclease HII OS=Methanosarcina acetivorans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31007F08EF AbioticL1 Citrus clementina cDNA clone C31007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869020 ID=FC869020; Name=FC869020; organism=Citrus clementina; type=EST; length=693bp
GATTTTAGGATTCAATCCAAATCAGCCAATTCAGATAGAGAGAGAGTTAT
GGGATCGGAAGCAGCTCTTCCCAAATGGGCTTCAAATCCTTGTATTATGG
GCATCGACGAAGCTGGCCGTGGCCCCGTTTTAGGACCCATGGTGTACGGA
TGCTTGTACTGTCCCTGTTCCTATCAGCAGACTCTTGCTACCTTGAATTT
TGCAGATTCAAAAACACTAAAGGAAGAGAAGCGGGAGGAATTATTTGAGG
ATTTGAAGGTTAATGACTCTGTTGGGTGGGCTGTAGATATTATAGATCCT
AGGGAGCTCTCAGCTAAGATGCTTAATAAAAATAAGATAAACCTGAATGA
GATTTCACATGACTCAGCAATTGGCCTGATCACAAGGGTACTAAACATAG
GAGTTCTTCTAACTGAGGTTTATTTGGATACGGTGGGAGATGCTGAGAAG
TACCAAGCAAAACTTTCTCAGAGATTTCCTTCCATCAAATTTGTTGTATC
AAAGAAGGCTGACAGTCTCTATCCAGTTGTTAGTGGTGCAAGCATAGTTG
CGAAGGTCACTAGAGATCGAACTTTGAGAGGATGGATATTTGAGGAAACA
GCTGAAAATATGCATCGGAACTTTGGTTCTGGATATCCTGGAGATCCTGA
AACCAGGNCTGGTTGACAGATCATAACACATTATATTTGGATT
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