FC869020

Overview
NameFC869020
Unique NameFC869020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869020_ssr37 microsatellite FC869020_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9447 contig Ccv1_Contig9447:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PYRHO (Ribonuclease HII OS=Pyrococcus horikoshii GN=rnhB PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 59/192 (30.73%), Postives = 99/192 (51.56%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKF----VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            + G+DEAGRGPV+GP+V G         + L  +   DSK L   +RE+LF  L ++    + V ++ P+E+  +  + N++   +         +  + ++ +   ++Y+D+     K  A L +    +K+    +   KAD+ Y +VS ASI+AKVTRDR +      E  +  +  FGSGYP DP T+
Sbjct:    3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKL-IDILDDYYVLLVTPKEIDERHHSMNELEAEK--------FVVALNSLRIKPQKIYVDSADVDPKRFASLIK--AGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREI------EKLKQKYGEFGSGYPSDPRTK 177          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METBF (Ribonuclease HII OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rnhB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 66/197 (33.50%), Postives = 102/197 (51.78%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            I GIDEAG+GPV+GPM  G +    S    L  L  ADSK L  +KRE+L   +K   + G+ V  + P ++      +  + +NEI     +   ++VL   +    +Y D    +AE++   + +++          I+ +   +AD+ YPVVS ASI+AKV RD      + EE  +    +FGSGYP DP+T+
Sbjct:    3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIK-KHADGFFVLEVSPSQIDEL---RKIMTMNEI----MVVCFSKVLE-QLKPDLLYADAADVNAERFATNIRKQYSKTNPDHAKEIEIISMHQADATYPVVSAASIIAKVRRDE-----LIEELKKEWGLDFGSGYPSDPKTK 185          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_AERPE (Ribonuclease HII OS=Aeropyrum pernix GN=rnhB PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 65/191 (34.03%), Postives = 100/191 (52.36%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW-AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGVLLTEVYLDTVGDAEKYQAKLSQR-FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            ++G+DEAGRG ++G +V        +    L +L   DSK L    R EL+ ++     VG+  V+ I P E+  +       N+N +   +   +++R+++ +GV  + V +D  GD +  +  L++        +V +KADS YPVVS ASIVAKV RD  L      +    M+   GSGYP DPETR
Sbjct:    4 VVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREIS---GVGFFTVEAIRPWEIDGE-------NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDVQGLRLALTRLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARL------QVLRRMYGVRGSGYPSDPETR 178          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METHJ (Ribonuclease HII OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rnhB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 66/189 (34.92%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            I G+DEAG+G VLGPMV   +   C+    L  L  ADSK L  + RE++  D+K        +      +   + +  N+I     SH  A+        I +  T  Y+D    +E+   +    F  P    V   KADSL+P VS ASI+AKV RDR     I EE ++  + + GSGYP DP T
Sbjct:    2 ICGVDEAGKGSVLGPMVVAAV--GCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPFSIVIRTAHDIDELRRTMTMNEIVAR--SHAEAL--------IPLNCTCAYVDACDVSEERYEETVSSFSPPDCTIVARHKADSLFPPVSAASIIAKVERDR-----IIEELSKE-YGDIGSGYPSDPVT 172          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_SULTO (Ribonuclease HII OS=Sulfolobus tokodaii GN=rnhB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 56/187 (29.95%), Postives = 100/187 (53.48%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            ++GIDEAGRG ++GPM+   +       + L  +   DSK L   +RE+LF D+  + S G+ +  + P E+ ++       NLNE+++ + I +I  ++    +   + +D VG+ +  + ++ +       V +  AD  +   S ASI+AKV RD  +      +T ++ + +FGSGYP DP+T
Sbjct:    3 VVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLF-DIICSYSEGFTIVKVSPEEIDSE-------NLNELTYKAMIKIIYSLVEFKPI--RISIDKVGNTKVVEQEIIKLGMEPNIVTN--ADVYFVEASAASIIAKVIRDNII------DTLKSKYGDFGSGYPSDPKT 171          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_SULSO (Ribonuclease HII OS=Sulfolobus solfataricus GN=rnhB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 63/186 (33.87%), Postives = 98/186 (52.69%), Query Frame = 1
Query:   97 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            +GIDEAGRG ++GPM+   +    +  + L  +   DSK L  E+RE+LF D+  N    + V  + P E+       +  NLN++++D+   +I  + +    +  V +D VGD EK   +L  +    K  V  KAD L+   S ASI+AKV RD       + +  + ++ +FGSGYP DP T
Sbjct:    3 VGIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLF-DIVANTVEAFTVVKVFPYEI-------DNYNLNDLTYDAVSKIILSLSSFNPEI--VTVDKVGD-EKPVIELINKL-GYKSNVVHKADVLFVEASAASIIAKVIRDN------YIDELKQVYGDFGSGYPADPRT 170          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METBU (Ribonuclease HII OS=Methanococcoides burtonii (strain DSM 6242) GN=rnhB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 69/203 (33.99%), Postives = 102/203 (50.25%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS--AKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTV-GDA-----EKYQAKL----SQRFPSIK--FVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            I+GIDEAG+GPV+GPM  G +         L  L  ADSK L  ++R  L   +K   + GW V  + P ++    K+++ N I                VL  G ++ E+  D +  DA     E++  +L     ++ P +    V+SK  AD L+PVVS ASI+AKV RD      + E+   +M  + GSGYP DP+T+
Sbjct:    3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIK-KYADGWFVYEVSPNQIDELRKLMSMNDI---------------MVLAFGSVIEELPSDKIYADAADVKEERFGKRLFDNYMEKHPDVSPPEVISKHGADDLFPVVSAASILAKVRRDE-----LIEKIKVDMGVDIGSGYPSDPKTK 184          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_ARCFU (Ribonuclease HII OS=Archaeoglobus fulgidus GN=rnhB PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 1
Query:  100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEV-YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            GIDEAG+G V+GP+V   +   CS +  L  L   DSK L + +REEL E+++        V  + P  L  +M  K    +NEI  +    +I R      L  E+ Y+D+     +  ++  +    ++ V   KAD  YP+V+ ASI+AKV R+R +      E  +    +FGSGY  DP TR
Sbjct:    4 GIDEAGKGCVIGPLVVAGV--ACSDEDRLRKLGVKDSKKLSQGRREELAEEIR--KICRTEVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLKEKFGDFGSGYASDPRTR 171          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THEON (Ribonuclease HII OS=Thermococcus onnurineus (strain NA1) GN=rnhB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 66/196 (33.67%), Postives = 96/196 (48.98%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDP---RELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDT--VGDA---EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            + GIDEAGRGPVLGPMV   +         L  L   DSK L  ++RE LF+++         V ++D     EL  + ++  +  LNE   ++ +  +    ++ V    VY+D   V +A   E+ +AKL         +   KAD  +  VS ASI+AKV RDR +      E  ++ +   GSGYP DP TR
Sbjct:    3 LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEI---------VQLLDDYVILELWPEEIDSREGTLNEFEVENFVKALN---SLKVKPDVVYIDAADVKEARFGEEIKAKLDF---EADIIAEHKADDKFVPVSAASILAKVARDRAI------EKLKDQYGEIGSGYPSDPRTR 177          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METST (Ribonuclease HII OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rnhB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 63/188 (33.51%), Postives = 92/188 (48.94%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAE-KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            I+GIDEAGRG V+GP+V G +       + L  +   DSK L  +KR  +   +K    +     II P     +  N N INLNEI  +     +  ++ I +     Y+D +   E ++  K+ +  P++  V   KAD  Y +VS ASI+AKV RD+ L      E     + + GSGYP D  T
Sbjct:    9 ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIK---KIAQFKTIIIPAHTIDEKRN-NDINLNEIETEG----MEEIIKI-MKPNACYIDCIDVRENRFHDKIQKINPNMTVVTEHKADETYKIVSAASIIAKVERDKQL------EIIRQEYGSVGSGYPSDKNT 181          
The following BLAST results are available for this feature:
BLAST of FC869020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RNH2_PYRHO2.041e-1730.73Ribonuclease HII OS=Pyrococcus horikoshii GN=rnhB ... [more]
RNH2_METBF3.481e-1733.50Ribonuclease HII OS=Methanosarcina barkeri (strain... [more]
RNH2_AERPE1.013e-1634.03Ribonuclease HII OS=Aeropyrum pernix GN=rnhB PE=3 ... [more]
RNH2_METHJ1.323e-1634.92Ribonuclease HII OS=Methanospirillum hungatei (str... [more]
RNH2_SULTO5.027e-1629.95Ribonuclease HII OS=Sulfolobus tokodaii GN=rnhB PE... [more]
RNH2_SULSO5.027e-1633.87Ribonuclease HII OS=Sulfolobus solfataricus GN=rnh... [more]
RNH2_METBU5.027e-1633.99Ribonuclease HII OS=Methanococcoides burtonii (str... [more]
RNH2_ARCFU6.566e-1633.69Ribonuclease HII OS=Archaeoglobus fulgidus GN=rnhB... [more]
RNH2_THEON2.495e-1533.67Ribonuclease HII OS=Thermococcus onnurineus (strai... [more]
RNH2_METST3.259e-1533.51Ribonuclease HII OS=Methanosphaera stadtmanae (str... [more]

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Properties
Property NameValue
Genbank descriptionC31007F08EF AbioticL1 Citrus clementina cDNA clone C31007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869020 ID=FC869020; Name=FC869020; organism=Citrus clementina; type=EST; length=693bp
GATTTTAGGATTCAATCCAAATCAGCCAATTCAGATAGAGAGAGAGTTAT
GGGATCGGAAGCAGCTCTTCCCAAATGGGCTTCAAATCCTTGTATTATGG
GCATCGACGAAGCTGGCCGTGGCCCCGTTTTAGGACCCATGGTGTACGGA
TGCTTGTACTGTCCCTGTTCCTATCAGCAGACTCTTGCTACCTTGAATTT
TGCAGATTCAAAAACACTAAAGGAAGAGAAGCGGGAGGAATTATTTGAGG
ATTTGAAGGTTAATGACTCTGTTGGGTGGGCTGTAGATATTATAGATCCT
AGGGAGCTCTCAGCTAAGATGCTTAATAAAAATAAGATAAACCTGAATGA
GATTTCACATGACTCAGCAATTGGCCTGATCACAAGGGTACTAAACATAG
GAGTTCTTCTAACTGAGGTTTATTTGGATACGGTGGGAGATGCTGAGAAG
TACCAAGCAAAACTTTCTCAGAGATTTCCTTCCATCAAATTTGTTGTATC
AAAGAAGGCTGACAGTCTCTATCCAGTTGTTAGTGGTGCAAGCATAGTTG
CGAAGGTCACTAGAGATCGAACTTTGAGAGGATGGATATTTGAGGAAACA
GCTGAAAATATGCATCGGAACTTTGGTTCTGGATATCCTGGAGATCCTGA
AACCAGGNCTGGTTGACAGATCATAACACATTATATTTGGATT
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