FC869020

Overview
NameFC869020
Unique NameFC869020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869020_ssr37 microsatellite FC869020_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9447 contig Ccv1_Contig9447:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_SULAC (Ribonuclease HII OS=Sulfolobus acidocaldarius GN=rnhB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 64/191 (33.51%), Postives = 99/191 (51.83%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLI--TRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            ++GIDEAGRG ++GPMV   +    ++ + L+ +   DSK L  +KRE LF    V     +A+ ++   P E+ ++       NLNEI++ + I +I    V N  +    V +D VG+A   + ++     S +  V   AD  Y  VS ASI+AKV RD  +         +  + +FGSGYPGD +T
Sbjct:    3 LVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLF---GVILEYSYAISLVKAYPEEIDSE-------NLNEITYRAMIQIIHSMSVYNPSI----VTVDKVGNASAVEREIININSSPR--VENNADVKYVEVSAASIIAKVVRDNII------NELKKTYGDFGSGYPGDKKT 171          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PICTO (Ribonuclease HII OS=Picrophilus torridus GN=rnhB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 61/190 (32.11%), Postives = 92/190 (48.42%), Query Frame = 1
Query:   91 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNF--ADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            C+ GIDEAGRGPV+GPMV   +   C+       +NF   DSK L   KR  +F D+     +     II+P E+   +    K +LN +    A  LI +         ++Y+D     E    ++ +     + +    AD    +VS ASI+AKV RD  +      E  ++++ +FGSGYP DP+T
Sbjct:    2 CVCGIDEAGRGPVIGPMVMAMV---CA-----DDINFYVNDSKLLTRNKRSLIFNDV---SGLYHKYYIINPAEIDDAV---KKHSLNNLEEQYAEKLILK-----AECEKIYIDCFDVNESRLERILKDRTGKEVICRHHADRDIKIVSAASIIAKVLRDNEI------EKLKSIYGDFGSGYPSDPKT 166          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METTH (Ribonuclease HII OS=Methanobacterium thermoautotrophicum GN=rnhB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 58/194 (29.90%), Postives = 93/194 (47.94%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---NFGSGYPGDPETR 657
            ++GIDEAGRGPV+GP+V   +  P      L  +   DSK L  E+R  L   ++        +  +   ++SA  +++ +    NLNEI   +   +I       V++  V +      E+ + ++   F  I+      AD+ Y  V+ ASI+AKV RD  +      E+ +  +R   + GSGYP DP TR
Sbjct:    3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIR-------RIARVFTVKISASDIDRMRERGFNLNEIEKIAIKRIIPEAQPDRVIIDSVDV----KPERLEEEIRSHFGEIEVTAEHGADTRYYPVAAASIIAKVERDLEI------ESIQKKNRKLGDIGSGYPSDPRTR 179          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METKA (Ribonuclease HII OS=Methanopyrus kandleri GN=rnhB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 62/188 (32.98%), Postives = 86/188 (45.74%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            +MGIDEAGRGPV GPMV   +  P    +    L   DSK L    R  L   L  ++ +   + I+ P E+  + + K +        ++   L+ R +       EV LD  G+    + +     P  I  +  ++AD+ Y VVS ASIVAK  RD     WI     E  +   GSGYP DP T
Sbjct:    4 VMGIDEAGRGPVFGPMVVAGVLAP----KRELGLGARDSKELTRSARRRLIRALMSDERLRVDLRIVWPWEIDEEGVAKAEF-------EAIRELVRRAMP-----DEVILDKPGNYSPERLRRELDLPEGINLIAEERADAKYEVVSAASIVAKTYRD-----WIV-RLLELEYGEVGSGYPSDPRT 169          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PYRAE (Ribonuclease HII OS=Pyrobaculum aerophilum GN=rnhB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 60/188 (31.91%), Postives = 89/188 (47.34%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            I GIDEAGRGPV+GPMV   +         +  +   DSK L    RE ++E  L+V   V + V  I+P E+ A  +++  +N  E+ + + +        I +   E Y     D    + +    F + K V++       P V+ ASIVAKV RDR +      +  +    +FGSGYP DP T
Sbjct:    2 IGGIDEAGRGPVIGPMVIAIV---VGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAACVNYVV--IEPAEIDA-YVSRGMLNALELKYTAQL--------INLCPAEYYYVDSPDVNPKRYESGLVFATGKRVIALHKGEAVPQVAAASIVAKVVRDRLI------QLLKKEVGDFGSGYPSDPRT 169          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THENV (Ribonuclease HII OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rnhB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 62/187 (33.16%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657
            G+DEAGRGPV+GPMV   +         LA L   DSK L  E+RE L++  L+  D V + V  ++P  +   +  +  +N  E+ + + +        I +   +VY     D +  +   +  F + + VV+       P V+ ASIVAKV RDR L   + +E  +     FGSGYP DP TR
Sbjct:    7 GVDEAGRGPVVGPMVIAVV---VGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVNYVV--VEPAVVDTYVW-RGLLNALELDYTAKL--------IELCPADVYYVDSPDVDPRRYGSALEFITGRRVVAMHKGESVPQVAAASIVAKVVRDR-LVALLKKEVGD-----FGSGYPSDPRTR 173          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METB6 (Ribonuclease HII OS=Methanoregula boonei (strain 6A8) GN=rnhB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 63/187 (33.69%), Postives = 87/187 (46.52%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            I G+DEAG+G VLGPMV   +    +  + +      DSK L   +RE LF  +K    V  A  +I   E+ A    + ++ LN     +   +I ++      +    ++    AE  +  LS      + V    ADS YPVVS ASIVAKVTRDR +            +   GSGYP DPET
Sbjct:    2 ICGVDEAGKGSVLGPMVIAGVGVGST--EMIDGFGLRDSKQLSPSERERLFVLIKKKCKV--ATVVISAAEIDAF---RREMTLNTCVARAHAVVIAQLAPEIAYVDACDVNPFRYAETVRGYLSS---PCEIVSEHHADSTYPVVSAASIVAKVTRDREI------AKLAKKYGQIGSGYPSDPET 172          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METS3 (Ribonuclease HII OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rnhB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 64/190 (33.68%), Postives = 88/190 (46.32%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-NFGSGYPGDPETR 657
            ++GIDEAGRG VLGP+V   +  P      L  +   DSK L   +R  L   LK      +  D++         +  + INLNEI     IG+   + N+     +  +D V   AE++Q KL+     +  V   KAD  Y  VS ASI+AK  RD      I E   + +     GSGYP DP T+
Sbjct:    3 VLGIDEAGRGSVLGPLVIAGVIVPEKMDIVLERMGVKDSKRLTPNRRTILSRKLKKM----FEYDLVVISAQDIDNMRADGINLNEIER---IGMEKILSNLNP--EKAIVDAVDIKAERFQNKLAND-TGVNVVAEHKADDNYIEVSAASIIAKQERD----AHIAEINKDYIKMGGIGSGYPSDPITK 178          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_CALMQ (Ribonuclease HII OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rnhB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 61/185 (32.97%), Postives = 88/185 (47.57%), Query Frame = 1
Query:  100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            GIDEAGRGPV+GPMV   +    S  + +      DSK L    R  L++ L V+ +      I++P E+   +   N+  LNE+       LI     +    T VY+D+  D    + +       ++ +V   AD   P+VS ASIVAKV RD  +         +  + +FGSGYP DP T
Sbjct:   10 GIDEAGRGPVIGPMVIAIVGWSNSEAEGIGV---KDSKQLTPSGRSRLYK-LIVSKAPCVRHVIVEPSEIDYYV---NRGLLNELEAIKMSELIKACSGV----TRVYVDS-PDPNPSRFRGFINVKDVELIVLNHADESIPLVSAASIVAKVIRDTII------SRLKETYGDFGSGYPSDPRT 176          
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PYRIL (Ribonuclease HII OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rnhB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 59/188 (31.38%), Postives = 90/188 (47.87%), Query Frame = 1
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654
            I GIDEAGRGPV+GPMV   +       + L  L   DSKTL   KRE ++   ++V D V + V  ++P  +  + + +  +N  E+   + +        I +   E+Y     D    +   +  F + + VV+       P V+ ASIVAKV RDR +      +  +    +FGSGYP D +T
Sbjct:    2 ICGIDEAGRGPVVGPMVIAAV---AGDGERLLQLGVRDSKTLSPTKREVIYARIIEVADCVNYVV--VEPHIID-EYVRRRMLNSLELDFTARL--------IELCPAELYYVDSPDVNSRRYGDALSFITGRRVVALHGGESVPQVAAASIVAKVIRDRLI------DILKREIGDFGSGYPSDVKT 169          
The following BLAST results are available for this feature:
BLAST of FC869020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RNH2_SULAC4.256e-1533.51Ribonuclease HII OS=Sulfolobus acidocaldarius GN=r... [more]
RNH2_PICTO1.369e-1332.11Ribonuclease HII OS=Picrophilus torridus GN=rnhB P... [more]
RNH2_METTH5.202e-1329.90Ribonuclease HII OS=Methanobacterium thermoautotro... [more]
RNH2_METKA5.202e-1332.98Ribonuclease HII OS=Methanopyrus kandleri GN=rnhB ... [more]
RNH2_PYRAE8.874e-1331.91Ribonuclease HII OS=Pyrobaculum aerophilum GN=rnhB... [more]
RNH2_THENV1.159e-1233.16Ribonuclease HII OS=Thermoproteus neutrophilus (st... [more]
RNH2_METB61.514e-1233.69Ribonuclease HII OS=Methanoregula boonei (strain 6... [more]
RNH2_METS34.404e-1233.68Ribonuclease HII OS=Methanobrevibacter smithii (st... [more]
RNH2_CALMQ5.752e-1232.97Ribonuclease HII OS=Caldivirga maquilingensis (str... [more]
RNH2_PYRIL2.855e-1131.38Ribonuclease HII OS=Pyrobaculum islandicum (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31007F08EF AbioticL1 Citrus clementina cDNA clone C31007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869020 ID=FC869020; Name=FC869020; organism=Citrus clementina; type=EST; length=693bp
GATTTTAGGATTCAATCCAAATCAGCCAATTCAGATAGAGAGAGAGTTAT
GGGATCGGAAGCAGCTCTTCCCAAATGGGCTTCAAATCCTTGTATTATGG
GCATCGACGAAGCTGGCCGTGGCCCCGTTTTAGGACCCATGGTGTACGGA
TGCTTGTACTGTCCCTGTTCCTATCAGCAGACTCTTGCTACCTTGAATTT
TGCAGATTCAAAAACACTAAAGGAAGAGAAGCGGGAGGAATTATTTGAGG
ATTTGAAGGTTAATGACTCTGTTGGGTGGGCTGTAGATATTATAGATCCT
AGGGAGCTCTCAGCTAAGATGCTTAATAAAAATAAGATAAACCTGAATGA
GATTTCACATGACTCAGCAATTGGCCTGATCACAAGGGTACTAAACATAG
GAGTTCTTCTAACTGAGGTTTATTTGGATACGGTGGGAGATGCTGAGAAG
TACCAAGCAAAACTTTCTCAGAGATTTCCTTCCATCAAATTTGTTGTATC
AAAGAAGGCTGACAGTCTCTATCCAGTTGTTAGTGGTGCAAGCATAGTTG
CGAAGGTCACTAGAGATCGAACTTTGAGAGGATGGATATTTGAGGAAACA
GCTGAAAATATGCATCGGAACTTTGGTTCTGGATATCCTGGAGATCCTGA
AACCAGGNCTGGTTGACAGATCATAACACATTATATTTGGATT
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