FC869020

Overview
NameFC869020
Unique NameFC869020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869020_ssr37 microsatellite FC869020_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9447 contig Ccv1_Contig9447:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_ORITB (Ribonuclease HII OS=Orientia tsutsugamushi (strain Boryong) GN=rnhB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 1 
Query:   94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 633
            + G+DEAGRGP+ GP+V   +       Q++   +  DSK L + KRE  ++  K+ +S  +++ I   +E+       +K N+ E +    +  I  V N+ ++ T+V +D            +  F   +F+   + D +   +S ASIVAKVTRDR ++    E      ++N G G
Sbjct:   16 VAGVDEAGRGPLAGPVVAAAVVV----NQSIMIDDIKDSKVLSKSKRESCYD--KITNSYYYSIGIASVQEI-------DKYNILEATK---LACIRAVKNLAIIPTKVLVDG-----------NMNFTDNRFISIVRGDQICYSISSASIVAKVTRDRIMQILHKEYPVYGWNQNCGYG 168
The following BLAST results are available for this feature:
BLAST of FC869020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RNH2_ORITB8.306e-1128.33Ribonuclease HII OS=Orientia tsutsugamushi (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31007F08EF AbioticL1 Citrus clementina cDNA clone C31007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869020 ID=FC869020; Name=FC869020; organism=Citrus clementina; type=EST; length=693bp
GATTTTAGGATTCAATCCAAATCAGCCAATTCAGATAGAGAGAGAGTTAT
GGGATCGGAAGCAGCTCTTCCCAAATGGGCTTCAAATCCTTGTATTATGG
GCATCGACGAAGCTGGCCGTGGCCCCGTTTTAGGACCCATGGTGTACGGA
TGCTTGTACTGTCCCTGTTCCTATCAGCAGACTCTTGCTACCTTGAATTT
TGCAGATTCAAAAACACTAAAGGAAGAGAAGCGGGAGGAATTATTTGAGG
ATTTGAAGGTTAATGACTCTGTTGGGTGGGCTGTAGATATTATAGATCCT
AGGGAGCTCTCAGCTAAGATGCTTAATAAAAATAAGATAAACCTGAATGA
GATTTCACATGACTCAGCAATTGGCCTGATCACAAGGGTACTAAACATAG
GAGTTCTTCTAACTGAGGTTTATTTGGATACGGTGGGAGATGCTGAGAAG
TACCAAGCAAAACTTTCTCAGAGATTTCCTTCCATCAAATTTGTTGTATC
AAAGAAGGCTGACAGTCTCTATCCAGTTGTTAGTGGTGCAAGCATAGTTG
CGAAGGTCACTAGAGATCGAACTTTGAGAGGATGGATATTTGAGGAAACA
GCTGAAAATATGCATCGGAACTTTGGTTCTGGATATCCTGGAGATCCTGA
AACCAGGNCTGGTTGACAGATCATAACACATTATATTTGGATT
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