FC869291

Overview
NameFC869291
Unique NameFC869291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9496 contig Ccv1_Contig9496:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: L14BA_XENLA (Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm14b-A PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 65/152 (42.76%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIAS--TTLP-SGTGSLP--DPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPT 582
            ISL SK++IRYEG+L+ I+TE S++ L  VRSFGTE R  D P  PP +++YEYI+FRGSDIKD+ V   P  + + ++  DPAI+QS    A  AS   ++P S    +P     + TS L        G   L  P  S GA  S   P+
Sbjct:   12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYIIFRGSDIKDITVCEPP--KASHALPQDPAIVQSSLGSAPAASYQPSVPYSPFRGMPTYSQLAATSLLSQQYAASLGLEKLGSPTASAGASSSCSSPS 160          
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14B_XENTR (Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGS 549
            ISL SK++IRYEG+L+ I+TE S++ L  VRSFGTE R  D P  PP +++YEYI+FRGSDIKD+ V   P  + + ++  DPAI+Q              S  GS P  + Q+S   +   PF+G P   Q   S
Sbjct:   12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYIIFRGSDIKDITVCEPP--KASHALPQDPAIVQ--------------SSLGSAPSASYQSS---VPYSPFRGMPTYSQLAAS 127          
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14B_HUMAN (Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAA 423
            ISL SK++IRYEG+L+ I+T+ S++ L  VRSFGTE R  D P  PP ++IYEYI+FRGSDIKD+ V   P  Q T  +  DPAI+QS    A+
Sbjct:   14 ISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRP-APPREEIYEYIIFRGSDIKDITVCEPPKAQHT--LPQDPAIVQSSLGSAS 104          
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LSM14_PLEWA (Protein LSM14 homolog OS=Pleurodeles waltlii GN=lsm14 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPS 447
            ISL SK+EIRYEG+L+ I+TE S++ L      GTE R  D P +PP D+++EYI+FRGSDIKDL V   P  Q   S+  DPAI+QS    ++ +  ++ S
Sbjct:   12 ISLISKAEIRYEGILYTIDTENSTVVLAKFALLGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSSTSFQSVSS 110          
The following BLAST results are available for this feature:
BLAST of FC869291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
L14BA_XENLA2.197e-2042.76Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm... [more]
LS14B_XENTR3.748e-2043.38Protein LSM14 homolog B OS=Xenopus tropicalis GN=l... [more]
LS14B_HUMAN6.392e-2054.26Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B ... [more]
LSM14_PLEWA1.021e-1748.04Protein LSM14 homolog OS=Pleurodeles waltlii GN=ls... [more]

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Properties
Property NameValue
Genbank descriptionC31010F04EF AbioticL1 Citrus clementina cDNA clone C31010F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869291 ID=FC869291; Name=FC869291; organism=Citrus clementina; type=EST; length=739bp
GATCATCATCAATTGTCTCGAGGAGTTTGAGAAAAGAAGGGGAAAAAAAG
GCACTCGTCTCAAAGGCTAATGGCAGCGGCGGCAACAGAGGCGCCCAGAT
CTTCTTCAAGTGGGTCTGCTGATTCGTACATCGGTAGCTTGATCAGCTTG
ACTTCCAAGTCTGAGATTCGTTACGAGGGTGTTCTCTTTAACATCAACAC
TGAAGAATCTAGCATCGGTTTGAGAAATGTAAGATCGTTTGGAACAGAAG
GGCGAAGAAAAGATGGTCCCCAGGTTCCACCAAGTGATAAAATTTATGAG
TACATACTCTTTCGAGGAAGTGATATCAAGGATTTGCAGGTCAAATCTTC
CCCACCGATTCAGACTACAACATCTATACACAATGATCCTGCTATTATAC
AGTCGCACTATTCTCAGGCAGCAATTGCATCTACAACCTTGCCTTCTGGT
ACTGGATCATTACCTGATCCAACTTCCCAAACGTCACAGCTAGGACTTTC
CAGACCTCCATTTCAGGGGAATCCTCCCCTTTATCAGCCAGGTGGCAGTT
TGGGTGCATGGGGTTCATCACCCATGCCCACAACAAATGGTGCTGGGCTT
GCCATGCCAATGTACTGGCAAGGATTCTATGGGTCACCGAATGGGCTTCA
GGGCCNAGCAGCACCTTTGCTTCAACCCCCTCCTGGATTGTCAATGCTAC
CGTCCATGCAGCAATCCCATGCATATCCTGCCATGAATC
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