FC869291
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: L14BA_XENLA (Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm14b-A PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20 Identity = 65/152 (42.76%), Postives = 87/152 (57.24%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIAS--TTLP-SGTGSLP--DPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPT 582 ISL SK++IRYEG+L+ I+TE S++ L VRSFGTE R D P PP +++YEYI+FRGSDIKD+ V P + + ++ DPAI+QS A AS ++P S +P + TS L G L P S GA S P+ Sbjct: 12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYIIFRGSDIKDITVCEPP--KASHALPQDPAIVQSSLGSAPAASYQPSVPYSPFRGMPTYSQLAATSLLSQQYAASLGLEKLGSPTASAGASSSCSSPS 160
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14B_XENTR (Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20 Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGS 549 ISL SK++IRYEG+L+ I+TE S++ L VRSFGTE R D P PP +++YEYI+FRGSDIKD+ V P + + ++ DPAI+Q S GS P + Q+S + PF+G P Q S Sbjct: 12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYIIFRGSDIKDITVCEPP--KASHALPQDPAIVQ--------------SSLGSAPSASYQSS---VPYSPFRGMPTYSQLAAS 127
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14B_HUMAN (Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20 Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAA 423 ISL SK++IRYEG+L+ I+T+ S++ L VRSFGTE R D P PP ++IYEYI+FRGSDIKD+ V P Q T + DPAI+QS A+ Sbjct: 14 ISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRP-APPREEIYEYIIFRGSDIKDITVCEPPKAQHT--LPQDPAIVQSSLGSAS 104
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LSM14_PLEWA (Protein LSM14 homolog OS=Pleurodeles waltlii GN=lsm14 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17 Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPS 447 ISL SK+EIRYEG+L+ I+TE S++ L GTE R D P +PP D+++EYI+FRGSDIKDL V P Q S+ DPAI+QS ++ + ++ S Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVVLAKFALLGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSSTSFQSVSS 110 The following BLAST results are available for this feature:
BLAST of FC869291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869291 ID=FC869291; Name=FC869291; organism=Citrus clementina; type=EST; length=739bpback to top |