FC869291
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: L14AB_XENLA (Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-B PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21 Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTN 588 ISL SK+EIRYEG+L+ I+TE S++ L VRSFGTE R D P +PP D+++EYI+FRGSDIKDL V P Q S+ DPAI+QS ++ +S S G + + S P G G SL ++G+ +T+ Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSSASSFQSVSSYGPFGRMPTYSQ---FSTSPLVGQQFGAVAGSSLTSFGAETTSSTS 154
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: L14AA_XENLA (Protein LSM14 homolog A-A OS=Xenopus laevis GN=lsm14a-A PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.390e-21 Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTG 456 ISL SK+EIRYEG+L+ I+TE S++ L VRSFGTE R D P +PP D+I+EYI+FRGSDIKDL V P Q S+ DPAI+QS ++ +S S G Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEIFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSSASSFQSVSSYG 113
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14A_XENTR (Protein LSM14 homolog A OS=Xenopus tropicalis GN=lsm14a PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21 Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTG 456 ISL SK+EIRYEG+L+ I+TE S++ L VRSFGTE R D P +PP D+++EYI+FRGSDIKDL V P Q S+ DPAI+QS ++ +S S G Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSSASSFQSVSSYG 113
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: SUM2_SCHPO (Protein sum2 OS=Schizosaccharomyces pombe GN=sum2 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21 Identity = 68/180 (37.78%), Postives = 101/180 (56.11%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQ-VPPSDKIYEYILFRGSDIKDLQVK------SSPPIQTTTSIHNDPAII-----QSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGL-AMPMYWQGFYGSPN 642 ISL SKS+IRY G+L +IN+++S++ L++VR GTEGR++D Q +PPSD +++YI+FRGSD+KDL+++ S+PP+Q NDPAII Q +++QA A P P Q G + P + P G L P+ T A A+P +YG+P+ Sbjct: 9 ISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDYIVFRGSDVKDLRIEEPATTPSAPPVQPP----NDPAIIGSNSGQYNWNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPYYMYPNAPAQFVPPGGL------PLGTPLDASTPAVP-----YYGAPD 173
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14A_PONAB (Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21 Identity = 69/153 (45.10%), Postives = 85/153 (55.56%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLY----------QPGGSLGAWGSS 570 ISL SK+EIRYEG+L+ I+TE S++ L VRSFGTE R D P +PP D+++EYI+FRGSDIKDL V P Q S+ DPAI+QS SL TS +G S PF G P Y Q G++G GSS Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQS-----------------SLGSSTSSFQSMG-SYGPF-GRMPTYSQFSPSSLVGQQFGAVGVAGSS 142
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14A_HUMAN (Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3) HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21 Identity = 69/153 (45.10%), Postives = 85/153 (55.56%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLY----------QPGGSLGAWGSS 570 ISL SK+EIRYEG+L+ I+TE S++ L VRSFGTE R D P +PP D+++EYI+FRGSDIKDL V P Q S+ DPAI+QS SL TS +G S PF G P Y Q G++G GSS Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQS-----------------SLGSSTSSFQSMG-SYGPF-GRMPTYSQFSPSSLVGQQFGAVGVAGSS 142
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14A_BOVIN (Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21 Identity = 69/153 (45.10%), Postives = 85/153 (55.56%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLY----------QPGGSLGAWGSS 570 ISL SK+EIRYEG+L+ I+TE S++ L VRSFGTE R D P +PP D+++EYI+FRGSDIKDL V P Q S+ DPAI+QS SL TS +G S PF G P Y Q G++G GSS Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQS-----------------SLGSSTSSFQSVG-SYGPF-GRMPTYSQFSPSSLVGQQFGAVGVAGSS 142
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14A_MOUSE (Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20 Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQS 405 ISL SK+EIRYEG+L+ I+TE S++ L VRSFGTE R D P +PP D+++EYI+FRGSDIKDL V P Q S+ DPAI+QS Sbjct: 12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQS 96
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: L14BB_XENLA (Protein LSM14 homolog B-B OS=Xenopus laevis GN=lsm14b-B PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20 Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLP 444 ISL SK++IRYEG+L+ I+TE S++ L VRSFGTE R D P PP +++YEYI+FRGSDIKD+ V P + + ++ DPAI+QS AA ++P Sbjct: 12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYIIFRGSDIKDITVCEPP--KASHALSQDPAIVQSSLGSAASYQPSVP 109
BLAST of FC869291 vs. ExPASy Swiss-Prot
Match: LS14B_MOUSE (Protein LSM14 homolog B OS=Mus musculus GN=Lsm14b PE=2 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20 Identity = 60/136 (44.12%), Postives = 78/136 (57.35%), Query Frame = 1 Query: 142 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGS 549 ISL SK++IRYEG+L+ I+T+ S++ L VRSFGTE R D P PP ++IYEYI+FRGSDIKD+ V P Q T + DPAI+QS SL ++ Q + PF+G PP Q S Sbjct: 14 ISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRP-APPREEIYEYIIFRGSDIKDITVCEPPKAQHT--LPQDPAIVQS-----------------SLGSASASPFQPHVPYSPFRGMPPYGQLAAS 129 The following BLAST results are available for this feature:
BLAST of FC869291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869291 ID=FC869291; Name=FC869291; organism=Citrus clementina; type=EST; length=739bpback to top |