FC870278
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.191e-42 Identity = 87/105 (82.86%), Postives = 97/105 (92.38%), Query Frame = 3 Query: 93 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRS--AGGAEKKK 401 TGLFVGLNKGHVVTK+E PPRP++RKGKTSKR F++NLI+EVAG APYE+RITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS AG +EKKK Sbjct: 4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.862e-42 Identity = 88/112 (78.57%), Postives = 96/112 (85.71%), Query Frame = 3 Query: 72 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGG--AEKKK 401 M Q TGLFVGLNKGHVVT++EL PRP RKGKTSKR F++NLI+EVAG APYE+RITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GG EKKK Sbjct: 1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.855e-41 Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = 3 Query: 93 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGG---AEKK 398 TGLFVGLNKGHVVT++EL PRP+ RKGKTSKR F++ LIREVAG APYE+RITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRKMRS GG AEKK Sbjct: 8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2) HSP 1 Score: 151.369 bits (381), Expect = 4.003e-36 Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 3 Query: 72 MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE 344 MAPKQPNTGLFVGLNKGH+VTKKEL PRPSDRKGKTSKR HFV+NLIREVAGF PYE+RITELLKVGKDKRALKV + K+G H + K+ E Sbjct: 1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.282e-30 Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = 3 Query: 105 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAE 392 VGLNKGH VTKK PRPS RKG S+RV V+ ++REVAG+APYERR+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+ LRKM++A E Sbjct: 6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.525e-27 Identity = 62/100 (62.00%), Postives = 72/100 (72.00%), Query Frame = 3 Query: 99 LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSAGGAEKK 398 L VGL KGH VTK E PRPS RKG SK FV++LIREV GFAP+ERR ELLKV KDKRALK K++LGTH R K+KR+E+SN L R A ++K Sbjct: 7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26 Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 3 Query: 105 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 380 VGLNKGH VTK PR S R+G+ +K FV+++IREV GFAPYERR ELLKV KDKRALK K+++GTH RAK+KREE+SN L MR A Sbjct: 9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL36_HUMAN (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 2.202e-26 Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 3 Query: 105 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 380 VGLNKGH VTK PR S R+G+ +K FV+++IREV GFAPYERR ELLKV KDKRALK K+++GTH RAK+KREE+SN L MR A Sbjct: 9 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26 Identity = 57/95 (60.00%), Postives = 77/95 (81.05%), Query Frame = 3 Query: 96 GLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 380 GL VGLNKG V+TK++LP RPS RKG+ SKR FV++++REVAGFAPYERR+ EL++ +DKRA K+AK++LGT KRAK K EE+++ ++ R A Sbjct: 4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98
BLAST of FC870278 vs. ExPASy Swiss-Prot
Match: RL36_BOVIN (60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3) HSP 1 Score: 118.242 bits (295), Expect = 3.755e-26 Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 3 Query: 105 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKMRSA 380 VGLNKGH VTK PR S R+G+ +K FV+++IREV GFAPYERR ELLKV KDKRALK K+++GTH RAK+KREE+SN L MR A Sbjct: 9 VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 100 The following BLAST results are available for this feature:
BLAST of FC870278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >FC870278 ID=FC870278; Name=FC870278; organism=Citrus clementina; type=EST; length=665bpback to top |