FC872105

Overview
NameFC872105
Unique NameFC872105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.959e-43
Identity = 99/235 (42.13%), Postives = 133/235 (56.60%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +  +++   FD  +K++    C+GKGFY+ +AFI+A  S+P FG     T  KRE+AAFFA  +HETT              +C++ E      YCTP+ Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALW+WM               R+  SA ++      GFG     ING  ECG    ++VQDR+  Y  YC   GV PG NL+C
Sbjct:   80 LGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 314          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.342e-43
Identity = 98/233 (42.06%), Postives = 129/233 (55.36%), Query Frame = 3
Query:   45 IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC*LDIWYENVTL 629
            +K++   +C+GK FY+ +AFI+A  S+P FG +      KRE+AAFFA  +HETT              +CF+ E      YC P+ Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFKTALW+WM               R+  S+ ++      GFG     ING  ECG     +VQDR+  Y  YC   GV PG NL+C    W+ N  L
Sbjct:   92 LKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALL 324          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.342e-43
Identity = 103/236 (43.64%), Postives = 132/236 (55.93%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD-------------FCFVEEISKTNP-YCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            VA +++P  FD  + ++    C  KGFYT DAF++A ++YP+F  T   DT KREVAAF A  +HETT              +CF EE +   P YC P P++PCA GK YYGRGPIQ+T N NY  AG+AIG D LN+P+ VA D  +SFKTA W+WM               ++  SA +Q      G+GE    ING  ECG     +V DR+  Y  YC   GV  G NL+C
Sbjct:   76 VASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDC 311          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.700e-43
Identity = 100/233 (42.92%), Postives = 131/233 (56.22%), Query Frame = 3
Query:   18 LVTPEFFDGIKNQA-PATCEGKG-FYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +++   FD + N      C+GKG FY+ +AFISA  S+P FG T      KRE+AAFFA  +HETT              +CF+ E      YCTP+ Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM               R+  S ++Q      GFG     ING  ECG  + ++VQDR+  Y  YC   GV PG NL+C
Sbjct:   71 VISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 303          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.658e-42
Identity = 99/233 (42.49%), Postives = 130/233 (55.79%), Query Frame = 3
Query:   18 LVTPEFFDGIKNQA-PATCEGKG-FYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +++   FD + N      C+GKG FY+ +AFISA  S+P FG T      KRE+AAFFA  +HETT              +CF+ E      YCTP+ Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D +ISFK+A+W+WM               R+  S  +Q      GFG     ING  ECG  + ++VQDR+  Y  YC   GV PG NL+C
Sbjct:   69 VISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 301          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 4.825e-42
Identity = 96/227 (42.29%), Postives = 127/227 (55.95%), Query Frame = 3
Query:   30 EFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +F D +K++  A C  +GFYT +AFI+A  S+P FG T DT   K+EVAAFF   +HETT              +CF +E +  + YC P+  +PCA+GK YYGRGP+QL+ N NY   GRAIG D LN+P+ VA D VI+FK A+W+WM         H+ +                 G+G     ING  ECG     +V DR+  Y  YC  FGV+PG NL+C
Sbjct:   94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDC 320          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.825e-42
Identity = 94/227 (41.41%), Postives = 129/227 (56.83%), Query Frame = 3
Query:   30 EFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSAL---------------NQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +F D +K++    C  +GFYT DAFI+A  S+P FG T DT   K+E+AAFF   +HETT              +CF +E + ++ YC+P+ ++PCA+GK YYGRGP+QL+ N NY   GRAIG D LN+P+ V+ D VI+FK A+W+WM         H+ +                 G+G     ING  ECG    A+V DR+  Y  YC   GV+PG NL+C
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDC 305          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.302e-42
Identity = 99/235 (42.13%), Postives = 127/235 (54.04%), Query Frame = 3
Query:    9 VADLVTPEFF-DGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +  L+T   F D +K++   +C GKGFYT DAFI+A  ++P FG T DT   KRE+AAF A  +HETT              +C++ E      YC P+ Q+PCA G+ YYGRGPIQ++ N NY  AG+AIG D +N+P+ VA D VISFKTA W+WM         H+ +                 GFG     ING  ECG     QVQDR+  Y  YC    V  G NL+C
Sbjct:   65 IGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDC 299          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.302e-42
Identity = 100/232 (43.10%), Postives = 128/232 (55.17%), Query Frame = 3
Query:   18 LVTPEFFDGI-KNQAPATCEGKGFYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            L++   FD + K++    C  KGFYT DAFI+A  +YP FG T DT   KRE+AAF    +HETT              +CFV E    + YC+ TPQ+PCA G+ YYGRGPIQ++ N NY   GRAIG D LN P+ VA D VISFK+ALW+WM               R+  S+ +       G+G     ING  ECG    ++VQDR+  +  YC   GV  G NL+C
Sbjct:   78 LISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE-RNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 308          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.230e-42
Identity = 100/232 (43.10%), Postives = 129/232 (55.60%), Query Frame = 3
Query:   18 LVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            L++   FD  +K++    C  KGFYT DAFI+A  +YP FG T DT   KRE+AAF    +HETT              +CFV E + +  YC+ TPQ+PCA G+ YYGRGPIQ++ N NY   GRAIG D LN P+ VA D VISFK+ALW+WM               R+  S+ +       G+G     ING  ECG    ++VQDR+  +  YC   GV  G NL+C
Sbjct:   79 LISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPST-YCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 309          
The following BLAST results are available for this feature:
BLAST of FC872105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_TOBAC1.959e-4342.13Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_SOLTU3.342e-4342.06Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI3_ORYSJ3.342e-4343.64Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_SOLTU5.700e-4342.92Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU1.658e-4242.49Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_ARATH4.825e-4242.29Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_BRANA4.825e-4241.41Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_VITVI6.302e-4242.13Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI5_PHAVU6.302e-4243.10Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIT_PHAVU8.230e-4243.10Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CF04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872105 ID=FC872105; Name=FC872105; organism=Citrus clementina; type=EST; length=764bp
GGGACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGACGGCATTAAG
AATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATACAAGAGATGC
ATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAACTGATACTA
AGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAAACAACAGAT
TTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTGTACACCGAC
TCCTCAATATCCATGTGCCAATGGTAAATTCTACTATGGCCGGGGACCGA
TTCAGCTCACCGGAAACGGAAACTACATAGATGCCGGAAGGGCCATCGGT
TTCGACGGTCTGAACTCTCCGGAAACGGTGGCCAGGGACCGTGTCATATC
TTTCAAGACTGCTTTGTGGTATTGGATGAGATACGTGCACTCAGCACTAA
ACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGC
GGCGGCCAAAACCGTGCACAAGTTCAGGATCGCGTTAGGCGTTACACTGA
TTATTGCAAAAGATTTGGTGTTGATCCTGGACCAAATCTCGAGTGCTGAT
TAGATATTTGGTATGAAAATGTTACACTATGTGTATTATATTATATCACA
GTAAGCCAGAGTTATTCCAAACAACTTTCTTTGTTTGGTAACTCTGATGG
AATAATTTTTGTGTACCTGATCATAAAATAAAGAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
back to top