FC872105

Overview
NameFC872105
Unique NameFC872105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:60..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.395e-41
Identity = 96/235 (40.85%), Postives = 135/235 (57.45%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            ++++++   FD  +K++   TC+GK FYT +AFI+A  S+  FG T DT   KREVAAFFA  +HETT              +C++ E      YC  + Q+PCA G+ YYGRGPIQ++ N NY   GRAIG + LN+P+ VA + V+SFK+A+W+WM               R+  SA ++      G+G     ING  ECG  + A+VQDR+  Y  YC   GV PG N++C
Sbjct:   85 ISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDC 319          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.395e-41
Identity = 98/233 (42.06%), Postives = 128/233 (54.94%), Query Frame = 3
Query:   18 LVTPEFFDGIKNQA-PATCEGKG-FYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +++   FD + N      C+GK  FY+ +AFISA  S+P FG T      KRE+AAF A  +HETT              +CF+ E      YCTP+ Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM               R+  S  +Q      GFG     ING  ECG  + ++VQDR+  Y  YC   GV PG NL+C
Sbjct:   71 VISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 303          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 169.088 bits (427), Expect = 2.395e-41
Identity = 99/235 (42.13%), Postives = 129/235 (54.89%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            V+ +V+   FD  + ++    C+ KGFYT DAF++A S++  FG T   DT KREVAAF A  +HETT              +CF +E   T+ YCTP+ Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+W+WM         H+ +                 GFG     +NG  ECG    ++V DR+  Y  YC   GV  G NL+C
Sbjct:   77 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 311          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.128e-41
Identity = 97/236 (41.10%), Postives = 128/236 (54.24%), Query Frame = 3
Query:    6 SVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            SV+ +++   FD  + ++    C+ KGFYT DAF++A +++P FG T +    KR+VAAF A  +HETT              +CF +E      YCTP+ Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTALW+WM         H+ +                 GFG     ING  ECG    ++V DR+  Y  YC   GV  G NL+C
Sbjct:   24 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDC 259          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.085e-41
Identity = 97/236 (41.10%), Postives = 131/236 (55.51%), Query Frame = 3
Query:    6 SVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            SV+ +V+   FD  + ++    C+ KGFYT DAF++A +++P FG T +    KREVAAF A  +HETT              +CF +E   ++ YCTP+ Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  + FKTA+W+WM               ++  S  ++      GFG     ING  ECG    ++V DR+  Y  YC   GV  G NL+C
Sbjct:   24 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 259          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.335e-41
Identity = 96/235 (40.85%), Postives = 127/235 (54.04%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            V+ +V+   FD  + ++    C+ KGFYT DAF++A  ++P FG T +    KREVAAF A  +HETT              +CF +E   T+ YCTP+ Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+W+WM         H+ +                 GFG     +NG  ECG    ++V DR+  Y  YC    V  G NL+C
Sbjct:   80 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDC 314          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.100e-41
Identity = 96/233 (41.20%), Postives = 128/233 (54.94%), Query Frame = 3
Query:   18 LVTPEFFDGIKNQA-PATCEGKG-FYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +++   FD + N      C+GK  FY+ +AF++A  S+P FG T      KRE+AAF A  +HETT              +CF+ E      YCTP+ Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM               R+  S  +Q      GFG     ING  ECG  + ++VQDR+  Y  YC   GV PG NL+C
Sbjct:   75 VISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDC 307          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.516e-40
Identity = 92/235 (39.15%), Postives = 128/235 (54.47%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +  +++   FD  +K++    C  KGFYT DAF++A  S+P FG T +    KRE+AAF    +HETT              +CF++E + ++ YC P+P+YPCA GK YYGRGP+QL+ N NY   G A+  + L +P+ VA DRV+SFKTALW+WM               R+  SA +       G+G     +NG  ECG     QV DR+  +  YC   GV  G NL+C
Sbjct:    2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDC 236          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.516e-40
Identity = 95/236 (40.25%), Postives = 130/236 (55.08%), Query Frame = 3
Query:    6 SVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEF---GRTDTK-REVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +++ L++ + F+  +K++    C+GK FYT DAF+SA  ++P F   G T TK RE+AAF    +HETT              +CF+ E    + YC  + ++PCA+GK YYGRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFKTALW+WM         H  +                 G+G     ING  ECG    ++VQDR+  Y  YC  FG+  G NL+C
Sbjct:   67 TLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE-QNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDC 301          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.241e-39
Identity = 91/237 (38.40%), Postives = 128/237 (54.01%), Query Frame = 3
Query:    3 DSVADLVTPEFFDGIK-NQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            D V  +V  + F+ +  ++    C  +GFYT +AF++A +++P FG T      KREVAAF    +HETT              +CF +E +  + YC P+P++PCA G+ YYGRGPIQL+ N NY  AGRAIG D L++P+ VA D  +SFKTALW+WM               R+  S  +       G+G     +NG  ECG     +V +R+  Y  YC  FG+  G NL+C
Sbjct:   87 DGVGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDC 323          
The following BLAST results are available for this feature:
BLAST of FC872105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI3_TOBAC2.395e-4140.85Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI3_SOLTU2.395e-4142.06Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_HORVU2.395e-4142.1326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE3.128e-4141.10Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_HORVU4.085e-4141.1026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIA_SECCE5.335e-4140.85Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIC_SOLLC9.100e-4141.20Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIT_CARPA4.516e-4039.15Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_PEA4.516e-4040.25Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_ORYSJ2.241e-3938.40Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CF04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872105 ID=FC872105; Name=FC872105; organism=Citrus clementina; type=EST; length=764bp
GGGACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGACGGCATTAAG
AATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATACAAGAGATGC
ATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAACTGATACTA
AGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAAACAACAGAT
TTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTGTACACCGAC
TCCTCAATATCCATGTGCCAATGGTAAATTCTACTATGGCCGGGGACCGA
TTCAGCTCACCGGAAACGGAAACTACATAGATGCCGGAAGGGCCATCGGT
TTCGACGGTCTGAACTCTCCGGAAACGGTGGCCAGGGACCGTGTCATATC
TTTCAAGACTGCTTTGTGGTATTGGATGAGATACGTGCACTCAGCACTAA
ACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGC
GGCGGCCAAAACCGTGCACAAGTTCAGGATCGCGTTAGGCGTTACACTGA
TTATTGCAAAAGATTTGGTGTTGATCCTGGACCAAATCTCGAGTGCTGAT
TAGATATTTGGTATGAAAATGTTACACTATGTGTATTATATTATATCACA
GTAAGCCAGAGTTATTCCAAACAACTTTCTTTGTTTGGTAACTCTGATGG
AATAATTTTTGTGTACCTGATCATAAAATAAAGAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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