FC872105

Overview
NameFC872105
Unique NameFC872105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.713e-35
Identity = 96/238 (40.34%), Postives = 121/238 (50.84%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEF----GRTDT-KREVAAFFAHVTHETTD-------------FCFVEEISKTN--PYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            VA +V+   FD  + ++  A C    FYT DAF++A S++P F    G  DT KREVAAF A  +HETT              +CF EE        YC  + Q+PCA GK YYGRGPIQL+ N NY  AG+AIG D L  P+ VA D  +SF TA W+WM               ++  SA +Q      G+G     ING  ECG     +V DR+  Y  YC   GV    NL+C
Sbjct:   81 VASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDC 318          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.316e-34
Identity = 91/223 (40.81%), Postives = 117/223 (52.47%), Query Frame = 3
Query:    6 SVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT--DT--KREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +V  +VT + FD  +KN+  A C    FYT DAFI+A +S+P FG T  DT  K+E+AAFF   +HETT      +      YC         NG  YYGRGPIQLTG  NY  AG+AI  D +N+P+ VA D  +SFKTA+W+WM               R+  SA +       G+G     ING  ECG    A+V+DR+  Y        V PG NL+C
Sbjct:   25 NVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTLSPDGPYAGGYCFLREGNQMGNG--YYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDC 245          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.250e-34
Identity = 91/222 (40.99%), Postives = 114/222 (51.35%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT--DTKR--EVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +  +VT + F+  +KN+    C   GFYT DAFI+A +S+P FG T  DT R  E+AAFF   +HETT      E   T  YC             YYGRGPIQLT   NY  AG AIG + +N+P+ VA D  ISFKTA+W+WM               R+  SA +Q      G+G     ING  ECG      V+DR+  Y  YC    V PG NL+C
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE-PFTGGYCFVRQN---DQSDRYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDC 244          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.400e-33
Identity = 92/236 (38.98%), Postives = 121/236 (51.27%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTD-----TKREVAAFFAHVTHETTD------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECG-GQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            V  ++T   F+  + N+  + C  +GFYT DAFI+A +S+P FG +       +RE+AAFF   +HETT             +CF EEI+K     T  P         YYGRGPIQLTG  NY  AG A+G D + +P+ V+ D V+SFKTA+W+WM               R+  SA +       G+G     ING  ECG GQN A V DR+  Y  YC   G   G NL+C
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGSSDQFQWGYCFKEEINKA----TSPP---------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANV-DRIGYYKRYCDMLGAGYGSNLDC 253          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.135e-33
Identity = 88/236 (37.29%), Postives = 116/236 (49.15%), Query Frame = 3
Query:    9 VADLVTPEFFDGI-KNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECG-GQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            ++D++    FD + K +  A C   GFYT +AFISA   +P+FG T      KRE+AAF    +HETT              +C+++EI+   PYC P+  Y C  GK Y GRGPIQL+ N NY   G  +    L  PE V  D VISFKTA+W+WM+        H+ +                 G+G     ING  ECG G   A  +DR+  Y  YC   G   G NL+C
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDC 323          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.094e-33
Identity = 88/229 (38.43%), Postives = 118/229 (51.53%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRY--------------------VHSALNQ--GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            VA +VT + F+  + ++  A C  +GFY   AF++A  ++P F  T   DT KREVAAF A  +H T+       +C+ E    T+ +C P  ++PCA GK Y+ RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WM                        SA  +  G+G T   + G  +C G N     DRV  Y  YC   GV  GPNL+C
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.094e-33
Identity = 88/229 (38.43%), Postives = 118/229 (51.53%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRY--------------------VHSALNQ--GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            VA +VT + F+  + ++  A C  +GFY   AF++A  ++P F  T   DT KREVAAF A  +H T+       +C+ E    T+ +C P  ++PCA GK Y+ RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WM                        SA  +  G+G T   + G  +C G N     DRV  Y  YC   GV  GPNL+C
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 88/222 (39.64%), Postives = 111/222 (50.00%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +  +VT + F+  +KN+    C   GFYT DAFI+A +S+P FG     T  ++E+AAFF   +HETT      E   T  YC             YYGRGPIQLT   NY  AG AI  D +N+P+ VA D  ISFKTA+W+WM                +  SA +Q      G G     ING  ECG    A V+DR+  Y  YC    V PG NL+C
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE-PFTGGYCFVRQN---DQSDRYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDC 244          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.537e-31
Identity = 82/225 (36.44%), Postives = 108/225 (48.00%), Query Frame = 3
Query:   45 IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQ--YPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR----------------------YVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            + N+   +C GKGFYT DA+  A   YP FG T   DT KRE+AAFFA  + ET+              +C V E++  + YC P  +  YPC     YYGRGP+QL  N NY + G  +G + L+ PE VA D V+SF+ ALW+WM                        + +    GFG     I    EC    + + Q+R+  Y  YC    VDPG NL C
Sbjct:   76 LPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYC 298          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.325e-28
Identity = 84/234 (35.90%), Postives = 115/234 (49.15%), Query Frame = 3
Query:    6 SVADLVTPEFFDGIKN-QAPATCEGKGFYTRDAFISALSSYPEFGRT--DT--KREVAAFFAHVTHETTD---------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGF--DGLNSPETVARDRVISFKTALWYWMRY-------------------VHSALNQ--GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +   +VT E F+ + + +    C  KGFYT DAFI+A +S+P FG T  DT  K+E+AAFF   +HET           +CFV +I +++ Y               YGRGPIQLT   NY  AG+ IG   D +N+P+ VA D +ISF+TA+W+WM                       +A N+  G+G     ING  EC       V+ R+  Y  YC    V  G NL+C
Sbjct:   26 NAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGGSAGTFTGGYCFVRQIDQSDRY---------------YGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDC 244          
The following BLAST results are available for this feature:
BLAST of FC872105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI12_ORYSJ5.713e-3540.34Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY6.316e-3440.81Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIQ_TOBAC8.250e-3440.99Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ2.400e-3338.98Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR3.135e-3337.29Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI7_ORYSJ4.094e-3338.43Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.094e-3338.43Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIP_TOBAC2.654e-3239.64Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_POPTR8.537e-3136.44Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIA_SOLCI2.325e-2835.90Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CF04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872105 ID=FC872105; Name=FC872105; organism=Citrus clementina; type=EST; length=764bp
GGGACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGACGGCATTAAG
AATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATACAAGAGATGC
ATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAACTGATACTA
AGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAAACAACAGAT
TTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTGTACACCGAC
TCCTCAATATCCATGTGCCAATGGTAAATTCTACTATGGCCGGGGACCGA
TTCAGCTCACCGGAAACGGAAACTACATAGATGCCGGAAGGGCCATCGGT
TTCGACGGTCTGAACTCTCCGGAAACGGTGGCCAGGGACCGTGTCATATC
TTTCAAGACTGCTTTGTGGTATTGGATGAGATACGTGCACTCAGCACTAA
ACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGC
GGCGGCCAAAACCGTGCACAAGTTCAGGATCGCGTTAGGCGTTACACTGA
TTATTGCAAAAGATTTGGTGTTGATCCTGGACCAAATCTCGAGTGCTGAT
TAGATATTTGGTATGAAAATGTTACACTATGTGTATTATATTATATCACA
GTAAGCCAGAGTTATTCCAAACAACTTTCTTTGTTTGGTAACTCTGATGG
AATAATTTTTGTGTACCTGATCATAAAATAAAGAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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