FC872973

Overview
NameFC872973
Unique NameFC872973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.684e-24
Identity = 65/230 (28.26%), Postives = 113/230 (49.13%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPP-IVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECL--SPNPFSASFTRASLNTARMVPLMYGYDDNQRLP---RLEEYVKSLLFDNLP 674
            WD+  +++LPE M++CF  + +  N I+ ++ +    N +  L+K+W  +  A+L EAKW+ SGH P  EEY++N  +S                 ++ + +  +  +   +V   +++ RL +DL ++ DE   G+    I  YM E    + + A+ H    I+D W  +N E +  S +     F    +N ARM   MY Y D    P   ++ + V SLLF+ +P
Sbjct:  361 WDINRLDELPEYMRLCFLVIYNEVNSIACEILRTKNINVIPFLKKSWTDVSKAYLVEAKWYKSGHKPNLEEYMQNARISISSPTIFVHFYCVFSDQLSIQVLETLSQHQQNVVRCSSSVFRLANDLVTSPDELARGDVCKSIQCYMSE-TGASEDKARSHVRQMINDLWDEMNYEKMAHSSSILHHDFMETVINLARMSQCMYQYGDGHGSPEKAKIVDRVMSLLFNPIP 589          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.093e-21
Identity = 67/205 (32.68%), Postives = 99/205 (48.29%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFS-ASFTRASLNTARMVPLMYGYDD 614
            WDL   + LPE MK  +  L    NE++ +  K  G + ++ +R A+ S  ++F+ EAKW +SG++P  EEYLKNG VSS                + +  ++ ID         +++LRL  D    K +   G + S I  YM +H   T EDA  H    ISDA + LN E L P+  S  S  + + +  R    +Y Y D
Sbjct:  410 WDLSETKCLPEYMKAVYMDLYQCLNELAQEAEKTQGRDTLNYIRNAYESHFDSFMHEAKWISSGYLPTFEEYLKNGKVSSGSRTATLQPILTLDVPLPNYILQEIDYPSRFNDLASSLLRLRGDTRCYKADRARGEEASAISCYMKDHPGSTEEDALNHINVMISDAIRELNWELLRPDSKSPISSKKHAFDITRAFHHLYKYRD 614          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.314e-20
Identity = 62/204 (30.39%), Postives = 95/204 (46.57%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDD 614
            WD+  I+++PE MK  +KAL D+  E+   V +      V   + A   L  ++L EAKW    + P  EE+  N + +                 +T ET +   S+P I+ +   I R  DD+   K +++  +D S I  YM E+  VTA++A       +  AWK LNQE L P          SLN AR++ ++Y   D
Sbjct:  329 WDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY-GVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGD 531          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.946e-20
Identity = 60/201 (29.85%), Postives = 96/201 (47.76%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQ-ECLSPNPFSASFTRASLNTARMVPLMY 602
            WD   I QLP  M++C+ AL +  +E +  + K+  +N +  L+++W SL   +L EA W+ +G+ P  EEYL N  +S                 I    +  +     I+    TILRL DDLG+++ E + G+    I  YM +  + +  +A +H    I +AWK +N     S  PF+     A+ N AR    +Y
Sbjct:  365 WDNKSISQLPYYMQVCYLALYNFVSERAYDILKDQHFNSIPYLQRSWVSLVEGYLKEAYWYYNGYKPSLEEYLNNAKISISAPTIISQLYFTLANSIDETAIESLYQYHNILYLSGTILRLADDLGTSQHELERGDVPKAIQCYMND-TNASEREAVEHVKFLIREAWKEMNTVTTASDCPFTDDLVAAAANLARAAQFIY 564          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD1_ABIGR (Alpha-bisabolene synthase OS=Abies grandis GN=ag1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.154e-20
Identity = 64/229 (27.95%), Postives = 104/229 (45.41%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVS-SXXXXXXXXXXXXXXXXITSETVRLID--SNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLPRLE--EYVKSLLFDNLP 674
            WDL   E LP+ MK+C++   DI +E++ +  KE G   V   RK W      +  EA+W A+ ++P  +EY+KNGI S                  ++ E +  +D      +    + I RL DD  + K E   G   S I  YM +H + T E+A  H    +  A K L +E L P+    +  +      R+  +++   D   + +LE  +++K  L + LP
Sbjct:  588 WDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLP 816          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.154e-20
Identity = 62/204 (30.39%), Postives = 95/204 (46.57%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDD 614
            WD+  + QLP  MKI +KAL ++  E+   +  +     V   +KA   L  A+L EAKW    + P  EE+  N + +S                IT ET +   S+P I+ +   I R  DD+   K  ++  +D S I  YM ++  VTA++A       I  +WK +N+E L P          SLN AR++ ++Y   D
Sbjct:  330 WDIKCMNQLPNYMKISYKALLNVYEEMEQLLANQGRQYRVEYAKKAMIRLVQAYLLEAKWTHQNYKPTFEEFRDNALPTSGYAMLAITAFVGMGEVITPETFKWAASDPKIIKASTIICRFMDDIAEHKFNHRREDDCSAIECYMKQY-GVTAQEAYNEFNKHIESSWKDVNEEFLKPTEMPTPVLCRSLNLARVMDVLYREGD 532          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD6_ABIGR (Camphene synthase, chloroplastic OS=Abies grandis GN=ag6 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.731e-20
Identity = 65/220 (29.55%), Postives = 102/220 (46.36%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSP-NPFSASFTRASLNTARMVPLMYGYDDNQRLPRLEEYVKSLL 659
            WD   +E LPE MK  +  +    NE++    K  G + ++  R+AW +  ++++ EAKW A+G++P  EEYL+NG VSS                     ++ +D    +   +  ILRL  D    K +   G + S I  YM ++  +T EDA  H    I DA + LN E L P N    +  + + + +R+    Y Y D      +E   KSL+
Sbjct:  391 WDPSAMECLPEYMKGVYMMVYHTVNEMARVAEKAQGRDTLNYARQAWEACFDSYMQEAKWIATGYLPTFEEYLENGKVSSAHRPCALQPILTLDIPFPDHILKEVDFPSKLNDLICIILRLRGDTRCYKADRARGEEASSISCYMKDNPGLTEEDALNHINFMIRDAIRELNWELLKPDNSVPITSKKHAFDISRVWHHGYRYRDGYSFANVE--TKSLV 608          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.731e-20
Identity = 61/223 (27.35%), Postives = 105/223 (47.09%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLP---RLEEYVKSLLF 662
            WDL  ++Q+P+ MKICFK   +  NEI+ +  K  G + +  ++K W     A+  EA+W A  ++P  +EY+ N  VS                 +T + +  I  +   +  +    RL +D  + + E   G   S +  YM +H +++ E+A KH    + +A   LN+E ++      +  R    TAR++ L Y   D   L     ++E+VK+ LF
Sbjct:  624 WDLSLVDQMPQDMKICFKGFYNTFNEIAEEGRKRQGRDVLSYIQKVWEVQLEAYTKEAEWSAVRYVPSYDEYIGNASVSIALGTVVLISALFTGEILTDDILSKIGRDSRFLYLMGLTGRLVNDTKTYQAERGQGEVASAVQCYMKDHPEISEEEALKHVYTIMDNALDELNREFVNNRDVPDTCRRLVFETARIMQLFYMDGDGLTLSHNMEIKEHVKNCLF 846          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.792e-20
Identity = 66/229 (28.82%), Postives = 105/229 (45.85%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPN---PFSASFTRASLNTARMVPLMYGYDDNQRLPRLE--EYVKSLLFDNLP 674
            WD   I+ LPE MK  + A+ D  NE++ +  +  G + +   R+AW +  ++++ EA+W A+G++P  +EY +NG VS                      ++ +D    +      ILRL  D    K +   G + S I  YM ++  V+ EDA  H    ISD  K LN E L P+   P SA   + + + AR     Y Y D   +  +E    V   L +++P
Sbjct:  401 WDPSSIDCLPEYMKGVYIAVYDTVNEMAREAEEAQGRDTLTYAREAWEAYIDSYMQEARWIATGYLPSFDEYYENGKVSCGHRISALQPILTMDIPFPDHILKEVDFPSKLNDLACAILRLRGDTRCYKADRARGEEASSISCYMKDNPGVSEEDALDHINAMISDVIKGLNWELLKPDINVPISAK--KHAFDIARAFHYGYKYRDGYSVANVETKSLVTRTLLESVP 627          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.792e-20
Identity = 60/204 (29.41%), Postives = 95/204 (46.57%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDD 614
            WD+  I++LPE MK  +KAL D+  E+   V K      V   + A   L  ++L EA+W    + P  EE+  N + +                 +T ET +   ++P I+ +   I R  DD+   K +++  +D S I  YM E+  VTA++A       +  AWK +N+E L P          SLN AR++ ++Y   D
Sbjct:  329 WDIKCIDELPEYMKPSYKALLDVYEEMEQLVAKHGRQYRVEYAKNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY-GVTAQEAYDVFNKHVESAWKDVNKEFLKPTEMPTEVLNRSLNLARVMDVLYREGD 531          
The following BLAST results are available for this feature:
BLAST of FC872973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
MYRS1_ARATH7.684e-2428.26Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
TPSDB_ABIGR2.093e-2132.68Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
DCS1_GOSAR2.314e-2030.39(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
SSS_SALOF3.946e-2029.85(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
TPSD1_ABIGR5.154e-2027.95Alpha-bisabolene synthase OS=Abies grandis GN=ag1 ... [more]
DCS3_GOSAR5.154e-2030.39(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
TPSD6_ABIGR6.731e-2029.55Camphene synthase, chloroplastic OS=Abies grandis ... [more]
TPSD1_PINTA6.731e-2027.35Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
TPSD3_ABIGR8.792e-2028.82Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
DCS2_GOSAR8.792e-2029.41(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BA07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872973 ID=FC872973; Name=FC872973; organism=Citrus clementina; type=EST; length=763bp
GATGGGATCTTGGGGGCATTGAACAACTGCCGGAGTGCATGAAGATATGC
TTCAAGGCTCTGAACGATATCACTAATGAAATCAGCAACAAGGTGTATAA
GGAGCATGGGTATAACCCTGTCCACTCCCTGCGAAAGGCGTGGGGAAGTT
TGTGCAACGCGTTTCTGACAGAAGCGAAATGGTTTGCTTCCGGGCACATG
CCTAAGGCTGAAGAGTACTTGAAAAATGGGATTGTTAGCTCAGGGGTACA
CCTGGGACTTGTGCACGTTTTCTTTCTCCTGGGTCATGGCATCACCAGTG
AAACTGTGCGACTCATTGACAGCAACCCGCCCATAGTATCGTCCGTCGCA
ACAATTCTTCGACTTTGGGACGACTTAGGAAGTGCTAAGGATGAAAATCA
AGATGGCAACGATGGATCTTACATATATTACTACATGATGGAGCACCAAG
ACGTAACAGCTGAAGATGCACAAAAGCATGCTACGGATAAGATTTCAGAT
GCATGGAAGCGCCTAAACCAGGAATGCCTCTCCCCAAATCCATTTTCAGC
ATCTTTCACAAGGGCTTCTCTTAACACTGCCAGAATGGTTCCTTTGATGT
ATGGCTATGATGACAATCAGAGGCTTCCGAGACTCGAGGAGTATGTTAAG
TCCCTCCTCTTCGATAATTTGCCTACTCAAGGAGTGTACTAGTTAGTGAT
AAAGCTCCATACCTACGTACGTATACTATGGAAGTTTCTTTAAAAAAAAA
AAAAAAAAAAAAA
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