FC872973

Overview
NameFC872973
Unique NameFC872973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD1_PICAB (Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.148e-19
Identity = 60/223 (26.91%), Postives = 103/223 (46.19%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRL---PRLEEYVKSLLF 662
            WDL  ++++P+ MKICF    +  NEI+ +  K  G + +  +R  W     A+  EA+W A+ ++P  +EY+ N  VS                 +T + +  I      +  +    RL +D  + + E   G   S +  YM +H +++ E+A KH    + +A   LN+E ++      S  R    TAR++ L Y   D   L     ++E+VK+ LF
Sbjct:  633 WDLSLVDRMPQDMKICFMGFYNTFNEIAEEGRKRQGRDVLGYIRNVWEIQLEAYTKEAEWSAARYVPSFDEYIDNASVSIALGTVVLISALFTGEILTDDVLSKIGRGSRFLQLMGLTGRLVNDTKTYEAERGQGEVASAVQCYMKDHPEISEEEALKHVYTVMENALDELNREFVNNREVPDSCRRLVFETARIMQLFYMDGDGLTLSHETEIKEHVKNCLF 855          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.500e-19
Identity = 65/205 (31.71%), Postives = 93/205 (45.37%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFS-ASFTRASLNTARMVPLMYGYDD 614
            WDL     LPE MK  +  L    NE+  +  K  G + ++ ++ AW +L + F+ EAKW +S ++P  EEYLKN  VSS                +    ++ ID         ++ILRL  D    K +   G + S I  YM +H     EDA  H    ISDA + LN E L P+  S  S  + + +  R    +Y Y D
Sbjct:  410 WDLSTTRWLPEYMKGVYMDLYQCINEMVEEAEKTQGRDMLNYIQNAWEALFDTFMQEAKWISSSYLPTFEEYLKNAKVSSGSRIATLQPILTLDVPLPDYILQEIDYPSRFNELASSILRLRGDTRCYKADRARGEEASAISCYMKDHPGSIEEDALNHINAMISDAIRELNWELLRPDSKSPISSKKHAFDITRAFHHVYKYRD 614          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD2_ABIGR (Myrcene synthase, chloroplastic OS=Abies grandis GN=ag2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.959e-19
Identity = 67/230 (29.13%), Postives = 108/230 (46.96%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPN---PFSASFTRASLNTARMVPLMYGYDD-----NQRLPRL--EEYVKSLLF 662
            W+   IE LPE MK  +  + +  NE++ +  K  G N ++ +RKAW +  ++++ EAKW ++G++P  EEY +NG VSS                +    ++ ID         ++ LRL  D    K +   G + S I  YM ++   T EDA  H    ++D  K LN E L  N   P  A   + + +  R +  +Y Y D     N+   +L  E  ++S+LF
Sbjct:  400 WNSSEIEHLPEYMKCVYMVVFETVNELTREAEKTQGRNTLNYVRKAWEAYFDSYMEEAKWISNGYLPMFEEYHENGKVSSAYRVATLQPILTLNAWLPDYILKGIDFPSRFNDLASSFLRLRGDTRCYKADRDRGEEASCISCYMKDNPGSTEEDALNHINAMVNDIIKELNWELLRSNDNIPMLAK--KHAFDITRALHHLYIYRDGFSVANKETKKLVMETLLESMLF 627          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.959e-19
Identity = 62/225 (27.56%), Postives = 107/225 (47.56%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMY----GYDDNQRLPRLEEYVKSLLFD 665
            WD+  +E+LP+ MK+ +K L +  +E   ++  E     V   R+A+  L   +  EA W   G +P  ++YL NG +++                      + +++NP +  +    +RL +DL S   E Q G+  S I  YM +H  V+ ++A K      +D WK +N+EC+  +  S       +N AR+  + Y    GY D+Q   +L+++VK L  D
Sbjct:  377 WDMSCLEKLPDYMKVIYKLLLNTFSEFEKELTAEGKSYSVKYGREAFQELVRGYYLEAVWRDEGKIPSFDDYLYNGSMTTGLPLVSTASFMGVQEITGLNEFQWLETNPKLSYASGAFIRLVNDLTSHVTEQQRGHVASCIDCYMNQH-GVSKDEAVKILQKMATDCWKEINEECMRQSQVSVGHLMRIVNLARLTDVSYKYGDGYTDSQ---QLKQFVKGLFVD 597          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.341e-19
Identity = 62/223 (27.80%), Postives = 104/223 (46.64%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLP---RLEEYVKSLLF 662
            WDL  ++++P+ MKICF  L +  NEI+ +  K  G + +  +R     L  A   EA+W A+ ++P  +EY++N  VS                 +T + +  I      +  +    RL +D  + + E   G   S +  YM EH +++ E+A KH    + +A   LN+E ++      S  R    TAR++ L Y   D   L     ++E+VK+ LF
Sbjct:  641 WDLSLVDRMPQDMKICFTVLYNTVNEIAVEGRKRQGRDVLGYIRNVLEILLAAHTKEAEWSAARYVPSFDEYIENASVSISLGTLVLISVLFTGEILTDDVLSKIGRGSRFLQLMGLTGRLVNDTKTYEAERGQGEVASAVQCYMKEHPEISEEEALKHVYTVMENALDELNREFVNNRDVPDSCRRLVFETARIMQLFYMEGDGLTLSHEMEIKEHVKNCLF 863          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSDV_ABIGR (Abietadiene synthase, chloroplastic OS=Abies grandis GN=ag22 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 59/223 (26.46%), Postives = 104/223 (46.64%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLP---RLEEYVKSLLF 662
            WDL  ++Q+P+ MKICF    +  N+I+ +  +  G + +  ++  W     A+  EA+W  + ++P   EY++N  VS                 +T E +  ID     +  +    RL +D  + + E   G   S I  YM +H  ++ E+A +H    + +A + LN+E ++ N     + R    TAR++ L Y   D   L     ++E+VK+ LF
Sbjct:  643 WDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVN-NKIPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLF 864          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD8_ABIGR (Beta-phellandrene synthase, chloroplastic OS=Abies grandis GN=ag8 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 56/179 (31.28%), Postives = 86/179 (48.04%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPN 539
            W+    E+LPE MK  + AL +   +++ +  K  G + ++  RKAW    +++  EAKW ASG++P  EEYL+N  VSS                +  + ++ ID         ++ LRL  D    K +   G + S I  YM ++  +T EDA  H    I+D  K LN E L P+
Sbjct:  403 WNPSEKERLPEYMKEIYMALYEALTDMAREAEKTQGRDTLNYARKAWEVYLDSYTQEAKWIASGYLPTFEEYLENAKVSSGHRAAALTPLLTLDVPLPDDVLKGIDFPSRFNDLASSFLRLRGDTRCYKADRDRGEEASSISCYMKDNPGLTEEDALNHINAMINDIIKELNWELLKPD 581          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 59/204 (28.92%), Postives = 94/204 (46.08%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDD 614
            WD+  I++LPE MK  +KAL D+  E+   V +      V   + A   L  ++L EA+W    + P  EE+  N + +                 +T ET +   ++P I+ +   I R  DD+   K +++  +D S I  YM E+  VTA++A       +  AWK +NQ  L P          SLN AR++ ++Y   D
Sbjct:  329 WDIKCIDELPEYMKPSYKALLDVYEEMEQLVAEHGRQYRVEYAKNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVTEHKFKHRREDDCSAIECYMEEY-GVTAQEAYDVFNKHVESAWKDVNQGFLKPTEMPTEVLNRSLNLARVMDVLYREGD 531          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.270e-18
Identity = 58/204 (28.43%), Postives = 94/204 (46.08%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDD 614
            WD+  I++LPE MK  +KAL D+  E+   V +      V   + A   L  ++L EA+W    + P  EE+  N + +                 +T ET +   ++P I+ +   I R  DD+   K +++  +D S I  YM E+  V+A++A       +  AWK +NQE   P          SLN AR++ ++Y   D
Sbjct:  329 WDIKCIDELPEYMKPSYKALLDVYKEMEQLVAEHGRQYRVEYAKNAMIRLAQSYLVEARWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY-GVSAQEAYDVFNKHVESAWKDVNQEFQKPTEMPTEVLNRSLNLARVMDVLYREGD 531          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD4_ABIGR (Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18
Identity = 58/226 (25.66%), Postives = 101/226 (44.69%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLPRLEEYVKSLLFDNLPTQ 680
            WDL   + LP+ +KI F+   +  NE+  ++ K  G +    ++  W     ++L EA+W A+GH+P   EY+KNG+ SS                +    +  I S   I+  +    R+ DDL   +DE + G   S +  YM E+ + T E+A  H    ++ + +  N E +  +       + + N  R +  +Y Y D   +   ++ VK  +F  L  Q
Sbjct:  353 WDLSLTDDLPDYIKIAFQFFFNTVNELIVEIVKRQGRDMTTIVKDCWKRYIESYLQEAEWIATGHIPTFNEYIKNGMASSGMCILNLNPLLLLDKLLPDNILEQIHSPSKILDLLELTGRIADDLKDFEDEKERGEMASSLQCYMKENPESTVENALNHIKGILNRSLEEFNWEFMKQDSVPMCCKKFTFNIGRGLQFIYKYRDGLYIS--DKEVKDQIFKILVHQ 576          
The following BLAST results are available for this feature:
BLAST of FC872973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TPSD1_PICAB1.148e-1926.91Levopimaradiene synthase, chloroplastic OS=Picea a... [more]
TPSDA_ABIGR1.500e-1931.71Limonene synthase, chloroplastic OS=Abies grandis ... [more]
TPSD2_ABIGR1.959e-1929.13Myrcene synthase, chloroplastic OS=Abies grandis G... [more]
CASS_RICCO1.959e-1927.56Casbene synthase, chloroplastic OS=Ricinus communi... [more]
TPSD2_PICAB3.341e-1927.80Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]
TPSDV_ABIGR9.720e-1926.46Abietadiene synthase, chloroplastic OS=Abies grand... [more]
TPSD8_ABIGR9.720e-1931.28Beta-phellandrene synthase, chloroplastic OS=Abies... [more]
DCS1_GOSHI9.720e-1928.92(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
DCS4_GOSAR1.270e-1828.43(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
TPSD4_ABIGR1.658e-1825.66Delta-selinene synthase OS=Abies grandis GN=ag4 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BA07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872973 ID=FC872973; Name=FC872973; organism=Citrus clementina; type=EST; length=763bp
GATGGGATCTTGGGGGCATTGAACAACTGCCGGAGTGCATGAAGATATGC
TTCAAGGCTCTGAACGATATCACTAATGAAATCAGCAACAAGGTGTATAA
GGAGCATGGGTATAACCCTGTCCACTCCCTGCGAAAGGCGTGGGGAAGTT
TGTGCAACGCGTTTCTGACAGAAGCGAAATGGTTTGCTTCCGGGCACATG
CCTAAGGCTGAAGAGTACTTGAAAAATGGGATTGTTAGCTCAGGGGTACA
CCTGGGACTTGTGCACGTTTTCTTTCTCCTGGGTCATGGCATCACCAGTG
AAACTGTGCGACTCATTGACAGCAACCCGCCCATAGTATCGTCCGTCGCA
ACAATTCTTCGACTTTGGGACGACTTAGGAAGTGCTAAGGATGAAAATCA
AGATGGCAACGATGGATCTTACATATATTACTACATGATGGAGCACCAAG
ACGTAACAGCTGAAGATGCACAAAAGCATGCTACGGATAAGATTTCAGAT
GCATGGAAGCGCCTAAACCAGGAATGCCTCTCCCCAAATCCATTTTCAGC
ATCTTTCACAAGGGCTTCTCTTAACACTGCCAGAATGGTTCCTTTGATGT
ATGGCTATGATGACAATCAGAGGCTTCCGAGACTCGAGGAGTATGTTAAG
TCCCTCCTCTTCGATAATTTGCCTACTCAAGGAGTGTACTAGTTAGTGAT
AAAGCTCCATACCTACGTACGTATACTATGGAAGTTTCTTTAAAAAAAAA
AAAAAAAAAAAAA
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