FC872973

Overview
NameFC872973
Unique NameFC872973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: ECS1_ARTAN (Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 60/228 (26.32%), Postives = 107/228 (46.93%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQE-CLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLPRLE--EYVKSLLFDNLPT 677
            W +  ++ LPE MK+ F+ L  I  EI   + K+   + V+ +++       +++TEA+W    ++P  EE+ K   +S                 I  ++   + +NPP+V++   + R  DDLGS K E    +  S I  YM +  D + + A +    K+ DAWK +N+E  ++    +       LN +R V ++Y   D+     +E   ++KSL  D + T
Sbjct:  321 WSITCLDGLPESMKLIFQMLVKIFEEIEEILSKDGKQHHVNYIKETLKEAVQSYMTEARWAKEEYIPTIEEHTKVSYISIGYKLALVAGFACMGDVIADDSFEWVFTNPPLVNACCLLCRTMDDLGSHKGEQDRKHVASTIECYMKQF-DASEQQAYESLNKKVEDAWKEINREFMITCKDVNIHVAMRVLNFSRSVDVLYKNKDHFTHVGVEVINHIKSLFVDAIIT 547          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 64/226 (28.32%), Postives = 104/226 (46.02%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDS---NPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDD--NQRLPRLEEYVKSLLFD 665
            WD   I +LP  M++C+  +++  ++ +  + KEHG+  +  LRK+   L  A+  EAKW+ SG+ P  +EYL    +S                   S    +IDS      I+     ILRL DDLG++  E   G+    I  YM E  + + E+A +H    I +AWK +N    +  PF       + N  R+   +Y + D    +  +  E++  LLF+
Sbjct:  373 WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFAN--ASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKE-TNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFE 595          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TASY_TAXBR (Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.127e-17
Identity = 56/224 (25.00%), Postives = 94/224 (41.96%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSP-NPFSASFTRASLNTARMVPLMYGYDDNQRL--PRLEEYVKSLLFD 665
            WD   + ++PECM+ CFK    +  E++N V K  G + +  +RK W    N ++ E +W  +G++P  EEYLK   +S                 +  + V  +     +   V+   RL +D  + + E   G   S I  YM ++   T EDA KH    +  A K  + E   P N           N    V + Y + D   +    +++Y++ +  D
Sbjct:  635 WDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYID 858          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TASY_TAXBA (Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.127e-17
Identity = 56/224 (25.00%), Postives = 94/224 (41.96%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSP-NPFSASFTRASLNTARMVPLMYGYDDNQRL--PRLEEYVKSLLFD 665
            WD   + ++PECM+ CFK    +  E++N V K  G + +  +RK W    N ++ E +W  +G++P  EEYLK   +S                 +  + V  +     +   V+   RL +D  + + E   G   S I  YM ++   T EDA KH    +  A K  + E   P N           N    V + Y + D   +    +++Y++ +  D
Sbjct:  635 WDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYID 858          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 56/224 (25.00%), Postives = 94/224 (41.96%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSP-NPFSASFTRASLNTARMVPLMYGYDDNQRL--PRLEEYVKSLLFD 665
            WD   + ++PECM+ CFK    +  E++N V K  G + +  +RK W    N ++ E +W  +G++P  EEYLK   +S                 +  + V  +     +   V+   RL +D  + + E   G   S I  YM ++   T EDA KH    +  A K  + E   P N           N    V + Y + D   +    +++Y++ +  D
Sbjct:  635 WDTSLLHEIPECMQTCFKVWFKLIEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLDAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNLGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYID 858          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 57/217 (26.27%), Postives = 102/217 (47.00%), Query Frame = 3
Query:   27 LPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLPR-LEEYVKSLLFDNLP 674
            +P+ MK  +    +  +++  ++ KE        L+K+     N ++ EAKW    ++   +EY +N I+SS                   +    + S+P I  +   I R  DD+ S + E++  +  + I  YM +   V+ E A +   + +SDAWK LNQE + P+ F        LN +R++ + Y Y D    P+ L+E++ SLL + +P
Sbjct:  331 IPDSMKFIYNVTVEFYDKLDEELEKEGRSGCGFHLKKSLQKTANGYMQEAKWLKKDYIATFDEYKENAILSSGYYALIAMTFVRMTDVAKLDAFEWLSSHPKIRVASEIISRFTDDISSYEFEHKREHVATGIDCYMQQF-GVSKERAVEVMGNIVSDAWKDLNQELMRPHVFPFPLLMRVLNLSRVIDVFYRYQDAYTNPKLLKEHIVSLLIETIP 546          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD9_ABIGR (Terpinolene synthase, chloroplastic OS=Abies grandis GN=ag9 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 50/176 (28.41%), Postives = 83/176 (47.16%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECL 530
            WD    + LPE MK  +  + +  NEI+ +  K  G   ++  R+AW +  ++++ EA+W +SG++P  EEY++   VS                 +T   ++ ID        + +ILRL +D    K +   G + S I  YM E+   T EDA  H    +++  K +N E L
Sbjct:  403 WDPSATDLLPEYMKGLYMVVYETVNEIAREADKSQGRETLNDARRAWEAYLDSYMKEAEWISSGYLPTFEEYMETSKVSFGYRIFALQPILTMDVPLTHHILQEIDFPLRFNDLICSILRLKNDTRCYKADRARGEEASCISCYMKENPGSTEEDAINHINAMVNNLIKEVNWELL 578          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 61/225 (27.11%), Postives = 102/225 (45.33%), Query Frame = 3
Query:    3 WDLGGIEQLPEC-MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASL-NTARMVPLMYGYDDNQRL--PRLEEYVKSLLFD 665
            WD+  ++ + +  +K+CF  L +  N       KE G + +  LRK W  L  ++  EA+W A+ ++P   EY++N  VS                 +    ++ +D     +  V+   RL +D  + + E   G   S +  YM E+ + T E+A  H    I +A K LN E  +P   +    R  L NTAR++ L Y Y D   +    ++++V   LFD
Sbjct:  646 WDISVLDSVRDNQLKVCFLGLYNTVNGFGKDGLKEQGRDVLGYLRKVWEGLLASYTKEAEWSAAKYVPTFNEYVENAKVSIALATVVLNSIFFTGELLPDYILQQVDLRSKFLHLVSLTGRLINDTKTYQAERNRGELVSSVQCYMRENPECTEEEALSHVYGIIDNALKELNWELANPASNAPLCVRRLLFNTARVMQLFYMYRDGFGISDKEMKDHVSRTLFD 870          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 55/228 (24.12%), Postives = 102/228 (44.74%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMY-----GYDDNQRLPRLEEYVKSLLFDNL 671
            WD+  I++LP+ MKI +KA+ D+  +   ++      + V    +    +   +  E+ WF  G+ P   EYL N + ++                 T +    +  NP I+ +   I R+ DD  + + E   G   + I   M ++  ++ ++A     +    AWK +N+  L P P S  F    LN AR+V + Y     GY   +++  L+ ++ +LL D++
Sbjct:  323 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY-GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKV--LKPHIINLLVDSI 546          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.236e-14
Identity = 57/223 (25.56%), Postives = 94/223 (42.15%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDD--NQRLPRLEEYVKSLLFD 665
            WD   +E L   MK  FK +  +  E    +  +     +  + + +  +    L   KW   GH+P  +EY+++G                       E    + S P +V  +    RL DD+   +++ + G   + + YYM EH  VT E+A +       D  K +N+ECL            S+N AR + ++Y  DD  N R  +L+EY++ LL D
Sbjct:  332 WDPDYMENLQGHMKTAFKFVMYLFKEYEEILRSQGRSFVLEKMIEEFKIIARKNLELVKWARGGHVPSFDEYIESGGAEIGTYATIACSIMGLGEIGKKEAFEWLISRPKLVRILGAKTRLMDDIADFEEDMEKGYTANALNYYMNEH-GVTKEEASRELEKMNGDMNKIVNEECLKITTMPRRILMQSVNYARSLDVLYTADDVYNHREGKLKEYMRLLLVD 553          
The following BLAST results are available for this feature:
BLAST of FC872973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ECS1_ARTAN8.229e-1826.32Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=... [more]
BPPS_SALOF1.833e-1728.32(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
TASY_TAXBR3.127e-1725.00Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=... [more]
TASY_TAXBA3.127e-1725.00Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 S... [more]
TASY_TAXCH5.334e-1725.00Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
HUMS_ARATH1.552e-1626.27Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
TPSD9_ABIGR2.027e-1628.41Terpinolene synthase, chloroplastic OS=Abies grand... [more]
TPSD1_GINBI4.515e-1627.11Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
5EAS_TOBAC8.515e-1524.12Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
BARS_ARATH3.236e-1425.56Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BA07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872973 ID=FC872973; Name=FC872973; organism=Citrus clementina; type=EST; length=763bp
GATGGGATCTTGGGGGCATTGAACAACTGCCGGAGTGCATGAAGATATGC
TTCAAGGCTCTGAACGATATCACTAATGAAATCAGCAACAAGGTGTATAA
GGAGCATGGGTATAACCCTGTCCACTCCCTGCGAAAGGCGTGGGGAAGTT
TGTGCAACGCGTTTCTGACAGAAGCGAAATGGTTTGCTTCCGGGCACATG
CCTAAGGCTGAAGAGTACTTGAAAAATGGGATTGTTAGCTCAGGGGTACA
CCTGGGACTTGTGCACGTTTTCTTTCTCCTGGGTCATGGCATCACCAGTG
AAACTGTGCGACTCATTGACAGCAACCCGCCCATAGTATCGTCCGTCGCA
ACAATTCTTCGACTTTGGGACGACTTAGGAAGTGCTAAGGATGAAAATCA
AGATGGCAACGATGGATCTTACATATATTACTACATGATGGAGCACCAAG
ACGTAACAGCTGAAGATGCACAAAAGCATGCTACGGATAAGATTTCAGAT
GCATGGAAGCGCCTAAACCAGGAATGCCTCTCCCCAAATCCATTTTCAGC
ATCTTTCACAAGGGCTTCTCTTAACACTGCCAGAATGGTTCCTTTGATGT
ATGGCTATGATGACAATCAGAGGCTTCCGAGACTCGAGGAGTATGTTAAG
TCCCTCCTCTTCGATAATTTGCCTACTCAAGGAGTGTACTAGTTAGTGAT
AAAGCTCCATACCTACGTACGTATACTATGGAAGTTTCTTTAAAAAAAAA
AAAAAAAAAAAAA
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