FC872976

Overview
NameFC872976
Unique NameFC872976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.524e-52
Identity = 114/227 (50.22%), Postives = 137/227 (60.35%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAP--------------------------TPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVE--------PSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F+S +VSP++P+  Y I  +SYELNVL TRGPRRM C+M +IP SS+E GG  P                          + TSF++S  +    F+S +  +                     +PL L+NK PRWHEQLQCWCLNFRGRVT+ASVKNFQLVAA          PS   P A+ EKVILQFGK+ +D+FTMDY YPLSAFQAFAICLSSFDTK ACE
Sbjct:  228 FNSTKVSPKVPSVTYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDSFRSTTSFSQSFRSTTSFSKSIMDPSMDFSSARFSD-----ISGSIMGGDDNGEIKERPLVLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLVAAPSPPPAGAPTPSQPGP-ADPEKVILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.965e-49
Identity = 111/218 (50.92%), Postives = 129/218 (59.17%), Query Frame = 1
Query:    7 SKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPT-PTSF-AQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQ----------------PLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPL---------AEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            S + + + P   Y I +ISYELNV  TRGPRRM C+M +IP SS+E GG  P+ P S  A S +E  F   S      + +                                  PL L+NKAPRWHEQLQCWCLNFRGRVTVASVKNFQL+AA +P+   P           E +KVILQFGK+ KD+FTMDYHYPLSAFQAFAI LSSFDTK ACE
Sbjct:  223 SNKGTAKHPCSTYSIANISYELNVFGTRGPRRMCCLMHSIPASSLEAGGTVPSQPDSILAHSLNESSFRSVSFSKSSVMDHSMHFSSAQFSDISIGDGPRIGGRVLSDDEECKETPLILQNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPVPPPPPEHDKVILQFGKVAKDMFTMDYHYPLSAFQAFAISLSSFDTKLACE 440          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.466e-49
Identity = 111/226 (49.12%), Postives = 133/226 (58.85%), Query Frame = 1
Query:    7 SKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAP-----------------TPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQE------------------KVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            S++VSP+LP  +Y I  + YELNVL TRGPRRM C M +IP S+++  G  P                 T TS   SF ++   F+S +  E                     +PL L+NK PRWHEQLQCWCLNFRGRVTVASVKNFQL+AA   S +  L +Q+                  KVILQFGK+GKD+FTMDY YPLSAFQAFAICL+SFDTK ACE
Sbjct:  230 SRRVSPKLPTGSYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPFEESFRSTNTSSRFSFMDRSLDFSSSRFSE---ISGSANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAS-SESSQLEQQQQQQQQNHASSSSSASDHGKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.172e-48
Identity = 107/212 (50.47%), Postives = 132/212 (62.26%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQ-SFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAV---------------EPSHNVPLAEQ---EKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F+SK+VSP++P+ +Y I  ++YELN+L TRGPRRMNCIM +IP  ++E GG  P+   F Q S DE F S  S K                        +PL LK K PRW + L+CWCLNF+GRVTVASVKNFQL++A                 PS +    EQ   +K+IL FGK+GKD+FTMDY YPLSAFQAFAI LS+FDTK ACE
Sbjct:  224 FNSKKVSPKVPSGSYNIAQVTYELNLLGTRGPRRMNCIMHSIPSLALEPGGTVPSQPEFLQRSLDESFRSIGSSK------IVNHSGDFTRPKEEEGKVRPLVLKTKPPRWLQPLRCWCLNFKGRVTVASVKNFQLMSAATVQPGSGSDGGALATRPSLSPQQPEQSNHDKIILHFGKVGKDMFTMDYRYPLSAFQAFAISLSTFDTKLACE 429          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.837e-48
Identity = 113/238 (47.48%), Postives = 133/238 (55.88%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAP------TPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQ------------PLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAV---------EPSHNVPLAEQ------------------EKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F S++VSP++P   Y I  ++YELNVL TRGPRRM C M +IP S++E GG  P       P  F +SF     SF+     +  T                  +            PL L+NKAPRWHEQLQCWCLNFRGRVTVASVKNFQL+AA          EPS     A+Q                  + VILQFGK+ KD+FTMDY YPLSAFQAFAICL+SFDTK ACE
Sbjct:  225 FSSRKVSPKVPTGCYPIVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPKELLPRLFEESFRSMATSFSKYSITDHSTDFSSSRFSEFGGGALQGQEQEQDGDDVNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAPQPSSGAASEPSQAGQAAQQQTQPSQPSSSSSSSSSNHDTVILQFGKVAKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 462          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.097e-47
Identity = 104/191 (54.45%), Postives = 125/191 (65.45%), Query Frame = 1
Query:   13 QVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGG--AAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            +VSPR+P  +Y I  ISYELNVL +RGPRRM CIM TIP S +E  G  A+ + +SF+      F S +     +P+                    PL L NKAPRWHEQL+CWCLNF GRVTVASVKNFQLVA  +          E++ILQFGK+GKD+FTMDY YP+SAFQAFAICLSSF+T+ ACE
Sbjct:  201 KVSPRVPQGSYPIAHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSRSSPVFRSHS-----KPLR---SNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVAVSDCEAG---QTSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.529e-46
Identity = 98/197 (49.75%), Postives = 124/197 (62.94%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHN----VPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            ++  +VS ++P  +Y +  I+YELNVL +RGPR+M C+M TIP S++E  G A  P+ F         S +  K     +                   PL L NK PRWHEQL+CWCLNF GRVTVASVKNFQLVAA     +     P  + E++ILQFGK+GKD+FTMDY YP+SAFQAFAICLSSF+T+ ACE
Sbjct:  206 YNPAKVSAKVPLGSYPVAHITYELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGTRSTLSRSQSKPLRSSS-------------SHLKETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQLVAAGASCGSGTGMSPERQSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 389          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP7_ARATH (Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.233e-43
Identity = 95/193 (49.22%), Postives = 119/193 (61.66%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F SKQ+SP++PA N+ +G +SY+ N+L++RGPRRM         S++     +P+ +S   S D++    T +  K                          LKNKAPRWHE LQCWCLNF GRVTVASVKNFQLVA V+ S      ++E V+LQFGK+G D FTMDY  PLSAFQAFAICL+SF TK ACE
Sbjct:  211 FASKQISPQVPAGNFEVGHVSYKFNLLKSRGPRRM--------VSTLRCPSPSPSSSSAGLSSDQKPCDVTKIMKKP----------------NKDGSSLTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPSGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP9_ORYSJ (Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.155e-41
Identity = 95/193 (49.22%), Postives = 112/193 (58.03%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F SKQ++P +   NY +G +SY+ N L++RGPRRM C +              P   S A    ++  S +S                           PLAL+NKAPRWHE LQCWCLNF GRVTVASVKNFQLVA    S    +A++E VILQFGKI  D FTMDY  PLSAFQAFAICL+SF TK ACE
Sbjct:  219 FASKQINPNVSGGNYEVGQVSYKFNFLKSRGPRRMQCNIQ------------CPVGQSTASDPLKKLISTSS---------------------------PLALRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAPAGTSDPWGIADEETVILQFGKIEDDAFTMDYRQPLSAFQAFAICLTSFGTKLACE 372          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.969e-41
Identity = 91/193 (47.15%), Postives = 112/193 (58.03%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F S+++ P++ A N+ +G ISY+ N+L++RGPRRM C M               T  ++  S   +    T                               L+NKAPRWHE LQCWCLNF GRVTVASVKNFQLVA  +PSH   + ++E VILQFGK+  +IFTMDY  PLSAFQAFAICLSSF TK ACE
Sbjct:  198 FGSRRICPQISAGNFNVGQISYKYNLLKSRGPRRMFCTME-----------CPSTQETWENSLKTKSLRCTGTT---------------------------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATADPSHPDSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFGTKLACE 352          
The following BLAST results are available for this feature:
BLAST of FC872976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLP3_ORYSJ5.524e-5250.22Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP13_ORYSJ1.965e-4950.92Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP12_ORYSJ7.466e-4949.12Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP5_ARATH2.172e-4850.47Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP7_ORYSJ2.837e-4847.48Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP9_ARATH4.097e-4754.45Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP11_ARATH4.529e-4649.75Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP7_ARATH1.233e-4349.22Tubby-like F-box protein 7 OS=Arabidopsis thaliana... [more]
TLP9_ORYSJ1.155e-4149.22Tubby-like F-box protein 9 OS=Oryza sativa subsp. ... [more]
TLP10_ORYSJ1.969e-4147.15Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BA10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872976 ID=FC872976; Name=FC872976; organism=Citrus clementina; type=EST; length=798bp
TTCCATTCTAAGCAGGTGTCTCCAAGATTACCTGCATATAACTACAGAAT
AGGCTCCATCTCCTATGAGCTTAATGTTCTCCGCACTAGGGGACCAAGGA
GAATGAATTGCATCATGGCCACTATTCCTTTCTCTTCCATTGAGGAAGGG
GGGGCAGCCCCAACACCAACATCTTTCGCACAGTCATTTGATGAGCAATT
TTTCTCCTTCACAAGTTTGAAAGGTAAGGAACCAATCACCTATAGTAGCT
CTCCAAGCCCCTCACTGTCACTGGCATCAACTCCAGGCTCTCCACAGCCA
CTGGCTCTTAAAAATAAGGCTCCAAGATGGCATGAGCAGCTACAATGTTG
GTGCCTAAATTTTCGAGGGCGTGTCACAGTGGCTTCTGTTAAGAATTTCC
AACTTGTGGCAGCTGTTGAGCCATCTCACAATGTGCCTCTAGCAGAACAA
GAAAAGGTAATTCTGCAATTTGGAAAGATCGGGAAAGATATCTTCACTAT
GGATTATCACTACCCACTCTCTGCCTTCCAGGCCTTTGCCATCTGTCTCA
GCAGCTTTGACACCAAACCAGCCTGTGAATAATGGTAATCATGAAGGGTG
GCATTTGTTGCCATCATTCACCGAATTGCTTCCTCAAGTTTTGTTAGTTT
GTTAATGGGCTTTGTGGAAGCTGATCATCCATAGTCATTTACCAGTTAAT
ATTAACACTGTGGTTGGTTCCAATCTTACAGCTCGGAAAGTTTAACTTGT
ATTTCGTATCTATCATCATGGCATTATTAAAACAAAATTATAAGAAGT
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