FC872976

Overview
NameFC872976
Unique NameFC872976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1157 contig Ccv1_Contig1157:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.274e-40
Identity = 89/193 (46.11%), Postives = 113/193 (58.55%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F S+++SP++ A NY +G +SY+ N+L++RGPRRM C +                      S  E + +    K ++P                        L+NKAPRWHE LQCWCLNF GRVTVASVKNFQLVAA +P+      ++E V+LQFGK+  +IFTMDY  PLSAFQAFAI LSSF TK ACE
Sbjct:  202 FGSRRISPQVSAGNYEVGQVSYKYNLLKSRGPRRMYCALE-------------------CPSTQETWENCLKTKFRKPTGNT-------------------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAAADPNDPASSKDEETVLLQFGKVDDNIFTMDYRQPLSAFQAFAISLSSFGTKLACE 356          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.847e-31
Identity = 81/191 (42.41%), Postives = 98/191 (51.31%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPA 573
            F +K   P +   +  +G +SY+ ++LR RGPRRM+C              +   P     + D Q        GK                        L L +K P WHE LQCWCLNF GRV VASVKNFQL+A VEP         + V+LQFGKI  D+FTMDY  PLSAFQAFAICLS+F TK A
Sbjct:  218 FGNKHRCPLVSTGDVEVGEVSYKYSLLRPRGPRRMSC--------------SVQCPVLKGTAVDPQ-------DGKR---------------LSNSIPSSLVLNSKVPSWHEHLQCWCLNFHGRVMVASVKNFQLIAPVEPGE----PSDKTVVLQFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKLA 368          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 64/177 (36.16%), Postives = 95/177 (53.67%), Query Frame = 1
Query:   49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            + ++ YE NVL  +GPR+M+ I   +P  ++     +  P    ++  E   +    K  E I                     + L+NK P W++  Q + LNF GRVT ASVKNFQ++   +P +         +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE
Sbjct:  367 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.568e-22
Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            + ++ YE NVL  +GPR+M+ I   +P  ++        P    ++  E   +    K  E I                     + L+NK P W++  Q + LNF GRVT ASVKNFQ++   +P +         +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE
Sbjct:  366 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.568e-22
Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            + ++ YE NVL  +GPR+M+ I   +P  ++        P    ++  E   +    K  E I                     + L+NK P W++  Q + LNF GRVT ASVKNFQ++   +P +         +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE
Sbjct:  366 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP3_MOUSE (Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22
Identity = 67/177 (37.85%), Postives = 93/177 (52.54%), Query Frame = 1
Query:   49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            + +I YE NVL  +GPR+M+ I   IP  ++        P    ++  E   S    K  E +                     + L NKAP W++  Q + LNF GRVT ASVKNFQ+V   +P +         +++QFG++  D+FT+DY+YPL A QAFAI LSSFD+K ACE
Sbjct:  321 LAAICYETNVLGFKGPRKMSVI---IPGMNMNHERIPFRP----RNEHESLLSKWQNKSMENL---------------------IELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGNDPDY---------IVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP3_HUMAN (Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22
Identity = 67/177 (37.85%), Postives = 93/177 (52.54%), Query Frame = 1
Query:   49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            + +ISYE NVL  +GPR+M+ I   IP  ++        P    Q+  +   S    +  E +                     + L NKAP W+   Q + LNFRGRVT ASVKNFQ+V   +P +         +++QFG++  D+FT+DY+YPL A QAF I LSSFD+K ACE
Sbjct:  303 LAAISYETNVLGFKGPRKMSVI---IPGMTLNHKQIPYQP----QNNHDSLLSRWQNRTMENL---------------------VELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDY---------IVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE 442          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP1_HUMAN (Tubby-related protein 1 OS=Homo sapiens GN=TULP1 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22
Identity = 68/187 (36.36%), Postives = 92/187 (49.20%), Query Frame = 1
Query:   19 SPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            S  + +    + ++ YE NVL  RGPRRM  I   IP  S E       P + +     ++ + T                             + L NK P W++    + LNF+GRVT ASVKNFQ+V A +P +         ++LQFG++ +D FT+DY YPL A QAFAI LSSFD K ACE
Sbjct:  393 STNVASLRQELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERVPIRPRNASDGLLVRWQNKT-------------------------LESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 542          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 69/177 (38.98%), Postives = 88/177 (49.72%), Query Frame = 1
Query:   49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            + ++ YE NVL  RGPRRM  I+  +  S  E     P   S       Q  +  SL                           + L NK P W+E    + LNF+GRVT ASVKNFQ+V A +P +         ++LQFG++ +D FT+DY YPL A QAFAI LSSFD K ACE
Sbjct:  404 LAAVVYETNVLGFRGPRRMTVIIPGMN-SDNERVPIRPRNASDGLLVRWQNKTLESL---------------------------IELHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 543          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP2_MOUSE (Tubby-related protein 2 OS=Mus musculus GN=Tulp2 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.503e-20
Identity = 64/175 (36.57%), Postives = 81/175 (46.29%), Query Frame = 1
Query:   49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPA 573
            +G + YE NVL  RGPR+M  I+                                S K +  +                     L L+NKAP W ++   + LNF GRVT ASVKNFQ+V   EP H         ++LQFG++  +IFTMD+ YPL   QAFAICLSSFD K A
Sbjct:  423 LGVVCYETNVLGFRGPRKMTVILP----------------------------GMDSRKQRMKVQPQNDQDSILSRVQKGAGHGLLLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDH---------LVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLA 560          
The following BLAST results are available for this feature:
BLAST of FC872976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLP1_ORYSJ8.274e-4046.11Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP2_ORYSJ1.847e-3142.41Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TUB_HUMAN1.200e-2236.16Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 ... [more]
TUB_RAT1.568e-2236.16Tubby protein homolog OS=Rattus norvegicus GN=Tub ... [more]
TUB_MOUSE1.568e-2236.16Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1[more]
TULP3_MOUSE3.492e-2237.85Tubby-related protein 3 OS=Mus musculus GN=Tulp3 P... [more]
TULP3_HUMAN4.561e-2237.85Tubby-related protein 3 OS=Homo sapiens GN=TULP3 P... [more]
TULP1_HUMAN7.780e-2236.36Tubby-related protein 1 OS=Homo sapiens GN=TULP1 P... [more]
TULP1_MOUSE2.264e-2138.98Tubby-related protein 1 OS=Mus musculus GN=Tulp1 P... [more]
TULP2_MOUSE2.503e-2036.57Tubby-related protein 2 OS=Mus musculus GN=Tulp2 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BA10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872976 ID=FC872976; Name=FC872976; organism=Citrus clementina; type=EST; length=798bp
TTCCATTCTAAGCAGGTGTCTCCAAGATTACCTGCATATAACTACAGAAT
AGGCTCCATCTCCTATGAGCTTAATGTTCTCCGCACTAGGGGACCAAGGA
GAATGAATTGCATCATGGCCACTATTCCTTTCTCTTCCATTGAGGAAGGG
GGGGCAGCCCCAACACCAACATCTTTCGCACAGTCATTTGATGAGCAATT
TTTCTCCTTCACAAGTTTGAAAGGTAAGGAACCAATCACCTATAGTAGCT
CTCCAAGCCCCTCACTGTCACTGGCATCAACTCCAGGCTCTCCACAGCCA
CTGGCTCTTAAAAATAAGGCTCCAAGATGGCATGAGCAGCTACAATGTTG
GTGCCTAAATTTTCGAGGGCGTGTCACAGTGGCTTCTGTTAAGAATTTCC
AACTTGTGGCAGCTGTTGAGCCATCTCACAATGTGCCTCTAGCAGAACAA
GAAAAGGTAATTCTGCAATTTGGAAAGATCGGGAAAGATATCTTCACTAT
GGATTATCACTACCCACTCTCTGCCTTCCAGGCCTTTGCCATCTGTCTCA
GCAGCTTTGACACCAAACCAGCCTGTGAATAATGGTAATCATGAAGGGTG
GCATTTGTTGCCATCATTCACCGAATTGCTTCCTCAAGTTTTGTTAGTTT
GTTAATGGGCTTTGTGGAAGCTGATCATCCATAGTCATTTACCAGTTAAT
ATTAACACTGTGGTTGGTTCCAATCTTACAGCTCGGAAAGTTTAACTTGT
ATTTCGTATCTATCATCATGGCATTATTAAAACAAAATTATAAGAAGT
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