FC872976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 8.274e-40 Identity = 89/193 (46.11%), Postives = 113/193 (58.55%), Query Frame = 1 Query: 1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579 F S+++SP++ A NY +G +SY+ N+L++RGPRRM C + S E + + K ++P L+NKAPRWHE LQCWCLNF GRVTVASVKNFQLVAA +P+ ++E V+LQFGK+ +IFTMDY PLSAFQAFAI LSSF TK ACE Sbjct: 202 FGSRRISPQVSAGNYEVGQVSYKYNLLKSRGPRRMYCALE-------------------CPSTQETWENCLKTKFRKPTGNT-------------------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAAADPNDPASSKDEETVLLQFGKVDDNIFTMDYRQPLSAFQAFAISLSSFGTKLACE 356
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.847e-31 Identity = 81/191 (42.41%), Postives = 98/191 (51.31%), Query Frame = 1 Query: 1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPA 573 F +K P + + +G +SY+ ++LR RGPRRM+C + P + D Q GK L L +K P WHE LQCWCLNF GRV VASVKNFQL+A VEP + V+LQFGKI D+FTMDY PLSAFQAFAICLS+F TK A Sbjct: 218 FGNKHRCPLVSTGDVEVGEVSYKYSLLRPRGPRRMSC--------------SVQCPVLKGTAVDPQ-------DGKR---------------LSNSIPSSLVLNSKVPSWHEHLQCWCLNFHGRVMVASVKNFQLIAPVEPGE----PSDKTVVLQFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKLA 368
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22 Identity = 64/177 (36.16%), Postives = 95/177 (53.67%), Query Frame = 1 Query: 49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579 + ++ YE NVL +GPR+M+ I +P ++ + P ++ E + K E I + L+NK P W++ Q + LNF GRVT ASVKNFQ++ +P + +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE Sbjct: 367 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.568e-22 Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 1 Query: 49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579 + ++ YE NVL +GPR+M+ I +P ++ P ++ E + K E I + L+NK P W++ Q + LNF GRVT ASVKNFQ++ +P + +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE Sbjct: 366 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.568e-22 Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 1 Query: 49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579 + ++ YE NVL +GPR+M+ I +P ++ P ++ E + K E I + L+NK P W++ Q + LNF GRVT ASVKNFQ++ +P + +++QFG++ +D+FTMDY+YPL A QAFAI LSSFD+K ACE Sbjct: 366 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP3_MOUSE (Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22 Identity = 67/177 (37.85%), Postives = 93/177 (52.54%), Query Frame = 1 Query: 49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579 + +I YE NVL +GPR+M+ I IP ++ P ++ E S K E + + L NKAP W++ Q + LNF GRVT ASVKNFQ+V +P + +++QFG++ D+FT+DY+YPL A QAFAI LSSFD+K ACE Sbjct: 321 LAAICYETNVLGFKGPRKMSVI---IPGMNMNHERIPFRP----RNEHESLLSKWQNKSMENL---------------------IELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGNDPDY---------IVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP3_HUMAN (Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22 Identity = 67/177 (37.85%), Postives = 93/177 (52.54%), Query Frame = 1 Query: 49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579 + +ISYE NVL +GPR+M+ I IP ++ P Q+ + S + E + + L NKAP W+ Q + LNFRGRVT ASVKNFQ+V +P + +++QFG++ D+FT+DY+YPL A QAF I LSSFD+K ACE Sbjct: 303 LAAISYETNVLGFKGPRKMSVI---IPGMTLNHKQIPYQP----QNNHDSLLSRWQNRTMENL---------------------VELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDY---------IVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE 442
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP1_HUMAN (Tubby-related protein 1 OS=Homo sapiens GN=TULP1 PE=1 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22 Identity = 68/187 (36.36%), Postives = 92/187 (49.20%), Query Frame = 1 Query: 19 SPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579 S + + + ++ YE NVL RGPRRM I IP S E P + + ++ + T + L NK P W++ + LNF+GRVT ASVKNFQ+V A +P + ++LQFG++ +D FT+DY YPL A QAFAI LSSFD K ACE Sbjct: 393 STNVASLRQELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERVPIRPRNASDGLLVRWQNKT-------------------------LESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 542
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21 Identity = 69/177 (38.98%), Postives = 88/177 (49.72%), Query Frame = 1 Query: 49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579 + ++ YE NVL RGPRRM I+ + S E P S Q + SL + L NK P W+E + LNF+GRVT ASVKNFQ+V A +P + ++LQFG++ +D FT+DY YPL A QAFAI LSSFD K ACE Sbjct: 404 LAAVVYETNVLGFRGPRRMTVIIPGMN-SDNERVPIRPRNASDGLLVRWQNKTLESL---------------------------IELHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 543
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP2_MOUSE (Tubby-related protein 2 OS=Mus musculus GN=Tulp2 PE=2 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 2.503e-20 Identity = 64/175 (36.57%), Postives = 81/175 (46.29%), Query Frame = 1 Query: 49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPA 573 +G + YE NVL RGPR+M I+ S K + + L L+NKAP W ++ + LNF GRVT ASVKNFQ+V EP H ++LQFG++ +IFTMD+ YPL QAFAICLSSFD K A Sbjct: 423 LGVVCYETNVLGFRGPRKMTVILP----------------------------GMDSRKQRMKVQPQNDQDSILSRVQKGAGHGLLLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDH---------LVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLA 560 The following BLAST results are available for this feature:
BLAST of FC872976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872976 ID=FC872976; Name=FC872976; organism=Citrus clementina; type=EST; length=798bpback to top |