FC872976

Overview
NameFC872976
Unique NameFC872976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1157 contig Ccv1_Contig1157:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TUB1_CAEEL (Tubby protein homolog 1 OS=Caenorhabditis elegans GN=tub-1 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.242e-19
Identity = 64/186 (34.41%), Postives = 89/186 (47.85%), Query Frame = 1
Query:   34 AYNYRIGSISYELNVLRTRGPRRMNCIMATI--PFSSIEEGGAAPTPTSFAQSFDEQFF--SFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            A    + ++ YE NVL  +GPR+M  +M  I  P  +         P     +  E++      SLK                            L NK+P+W+++ Q + LNF GRVT ASVKNFQ++    P         E +++QFG+I  D FTMD+ YPLSA QAF I ++SF  K ACE
Sbjct:  277 AIRQELAAVIYETNVLGFKGPRKMTIVMPGIEPPTENRPAVRCPVRPIQDKHTLLERYRLNDLDSLK---------------------------ILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQSSP---------EYIVMQFGRISDDEFTMDFRYPLSAVQAFGIAMTSFHGKLACE 426          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TULP2_HUMAN (Tubby-related protein 2 OS=Homo sapiens GN=TULP2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 61/171 (35.67%), Postives = 88/171 (51.46%), Query Frame = 1
Query:   49 IGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFD 561
            +G++ YE NVL   GPR+M  I+   P ++ +       P +  +S   ++        K+ +                     L L NK P W ++   + LNF GRVT ASVKNFQ+V   +P H      QE ++LQFG++G D FTMD+ +P S  QAF+ICLSSF+
Sbjct:  387 LGAVCYEPNVLGYLGPRKMTVIL---PGTNSQNQRINVQPLNEQESLLSRY----QRGDKQGL---------------------LLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIV---DPKH------QEHLVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520          
The following BLAST results are available for this feature:
BLAST of FC872976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TUB1_CAEEL1.242e-1934.41Tubby protein homolog 1 OS=Caenorhabditis elegans ... [more]
TULP2_HUMAN5.219e-1835.67Tubby-related protein 2 OS=Homo sapiens GN=TULP2 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BA10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872976 ID=FC872976; Name=FC872976; organism=Citrus clementina; type=EST; length=798bp
TTCCATTCTAAGCAGGTGTCTCCAAGATTACCTGCATATAACTACAGAAT
AGGCTCCATCTCCTATGAGCTTAATGTTCTCCGCACTAGGGGACCAAGGA
GAATGAATTGCATCATGGCCACTATTCCTTTCTCTTCCATTGAGGAAGGG
GGGGCAGCCCCAACACCAACATCTTTCGCACAGTCATTTGATGAGCAATT
TTTCTCCTTCACAAGTTTGAAAGGTAAGGAACCAATCACCTATAGTAGCT
CTCCAAGCCCCTCACTGTCACTGGCATCAACTCCAGGCTCTCCACAGCCA
CTGGCTCTTAAAAATAAGGCTCCAAGATGGCATGAGCAGCTACAATGTTG
GTGCCTAAATTTTCGAGGGCGTGTCACAGTGGCTTCTGTTAAGAATTTCC
AACTTGTGGCAGCTGTTGAGCCATCTCACAATGTGCCTCTAGCAGAACAA
GAAAAGGTAATTCTGCAATTTGGAAAGATCGGGAAAGATATCTTCACTAT
GGATTATCACTACCCACTCTCTGCCTTCCAGGCCTTTGCCATCTGTCTCA
GCAGCTTTGACACCAAACCAGCCTGTGAATAATGGTAATCATGAAGGGTG
GCATTTGTTGCCATCATTCACCGAATTGCTTCCTCAAGTTTTGTTAGTTT
GTTAATGGGCTTTGTGGAAGCTGATCATCCATAGTCATTTACCAGTTAAT
ATTAACACTGTGGTTGGTTCCAATCTTACAGCTCGGAAAGTTTAACTTGT
ATTTCGTATCTATCATCATGGCATTATTAAAACAAAATTATAAGAAGT
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