FC873139

Overview
NameFC873139
Unique NameFC873139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1071 contig Ccv1_Contig1071:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_PONAB (Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.716e-21
Identity = 63/188 (33.51%), Postives = 90/188 (47.87%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYV--VSGDEDGERGGAPVVCID---DASRHCSVFSKGQADWTPILLLVP 806
            D S+R+  +YR+ F PIG +  +SD GWGCMLR  QM++AQAL+   LGR W    QK   +EY  IL  F D +   +SIH + Q G   G + G W GP          A+   W +LA     +  +  + +     V  +  D  G+R    +   +     S +CS        W P+LL+VP
Sbjct:   48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLGADTAGDRPPDSLTASNLSKGTSAYCSA-------WKPLLLIVP 228          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_HUMAN (Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.487e-20
Identity = 64/191 (33.51%), Postives = 92/191 (48.17%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDGERGGAPVVCID------DASRHCSVFSKG------QADWTPILLLVP 806
            D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      +        +A+++     V  +E        V C        D+ RHC+ F  G       + W P++LL+P
Sbjct:   45 DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIP 227          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_XENLA (Cysteine protease ATG4A OS=Xenopus laevis GN=atg4a PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.487e-20
Identity = 65/188 (34.57%), Postives = 92/188 (48.94%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVC--------IDDASRHCSVFSKGQ------ADWTPILLLVP 806
            D  SR+  +YRK F PIG +  +SD GWGCMLR  QM++AQAL+   LGR WR    K    EY +IL  F D +   +SIH + Q G   G + G W GP  + +  + LA      +        +A+Y VS D          +C        +  A+ H S +S+ +      + W P+LL+VP
Sbjct:   50 DIVSRLWFTYRKKFSPIGGTGPSSDTGWGCMLRCGQMMLAQALVCQHLGRDWRWEKHKNHPEEYQQILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNS--------LAVY-VSMDNTVVVEDIKTMCKYQPQSCSMAQAASHQSTWSRCRDTSGHCSGWRPLLLVVP 228          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_XENLA (Cysteine protease ATG4B OS=Xenopus laevis GN=atg4b PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20
Identity = 63/183 (34.43%), Postives = 86/183 (46.99%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            D +SR+  +YR+ F  IG +  TSD GWGCMLR  QM+ AQAL+   +GR WR   QKP   EY+ IL  F D + S +SIH + Q G   G   G W GP          A+   W ++A     +  +    +       SG E  + G        D+   C       A W P++LL+P
Sbjct:   45 DITSRLWFTYRRNFQAIGGTGPTSDTGWGCMLRCGQMIFAQALICRHVGRDWRWDKQKP-KGEYLNILTAFLDKKDSYYSIHQIAQMGVGEGKYIGQWYGPNTVAQVLRKLAVFDQWSSIAVHIAMDNTVVVDEIRRLCRAGSG-ESSDAGALSNGYTGDSDPSC-------AQWKPLVLLIP 218          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_DANRE (Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20
Identity = 62/188 (32.98%), Postives = 90/188 (47.87%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCR---------SWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGA-----PVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            D +SR+  +YRK F PIG +  TSD GWGCMLR  QM++ +AL+   LGR W+    +    EYV IL+ F D + S +SIH + Q G   G + G W GP  + +         SW  LA     +  +  + +           D +RG       P     D    C++  +  A W P++LL+P
Sbjct:   45 DVTSRLWFTYRKNFQPIGGTGPTSDTGWGCMLRCGQMILGEALICRHLGRDWKWSPGQRQRPEYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDSWSRLAVHVAMDNTVVIEEIKRLCMPWL---DFDRGACAVSEEPREMNGDLEGACALAEEETALWKPLVLLIP 229          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_BOVIN (Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.536e-20
Identity = 64/185 (34.59%), Postives = 89/185 (48.11%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYV--VSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            D S+R+  +YR+ F PIG +  +SD GWGCMLR  QM++AQAL+   LGR W    QK   +EY  IL  F D +   +SIH + Q G   G + G W GP          A+   W +LA     +  +  + +        +S D   ER   P+  +  AS      S     W P+LL+VP
Sbjct:   48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWNWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRTLSLSADTPAER---PLESL-TASNQSKGPSACCTAWKPLLLIVP 228          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_MOUSE (Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 63/191 (32.98%), Postives = 93/191 (48.69%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDGERGGAPVVCI------DDASRHCSVFSKG------QADWTPILLLVP 806
            D +SR+  +YR+ F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA      +        +A+++     V  +E      A + C        D+ RHC+ F  G       + W P++LL+P
Sbjct:   45 DVASRLWFTYRRNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFLDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIP 227          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_CHICK (Cysteine protease ATG4A OS=Gallus gallus GN=ATG4A PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALA 620
            D S+R+  +YR+ F PIG +  +SD GWGCMLR  QM++AQAL+   LGR W+    K    EY  ILH F D +   +SIH + Q G   G + G W GP  + +  + LA
Sbjct:   31 DVSARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWQWEKHKKQPEEYHRILHCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLA 142          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4_PHANO (Probable cysteine protease ATG4 OS=Phaeosphaeria nodorum GN=ATG4 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 74/198 (37.37%), Postives = 95/198 (47.98%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK---------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLV 803
            F  DF SR+ ++YR GF PI  S+                      TSD G+GCM+RS Q ++A AL   RLGR WR   +   D+++ EIL LF D   +PFSIH  ++ G A  G   G W GP A  R  + LA   R E GL        +Y VSGD      GA V   +D  +  +V   G   W P L+LV
Sbjct:   96 FLDDFESRVWMTYRSGFSPIQKSQDPKATSAMSFRVRMQNLASPGFTSDAGFGCMIRSGQCILANALQILRLGRDWRWQ-ENHADKDHAEILSLFADDPQAPFSIHRFVEHGAAVCGKYPGEWFGPSAAARCIQDLANKHR-EAGL-------KVY-VSGD------GADV--YEDKLKQVAVDEDGL--WQPTLILV 273          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_CHICK (Cysteine protease ATG4B OS=Gallus gallus GN=ATG4B PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-18
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALA 620
            D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR    K     Y  +L+ F D + S +SIH + Q G   G + G W GP  + +  + LA
Sbjct:   44 DVTSRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWIKGKRQTDNYFSVLNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLA 155          
The following BLAST results are available for this feature:
BLAST of FC873139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ATG4A_PONAB8.716e-2133.51Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A P... [more]
ATG4B_HUMAN1.487e-2033.51Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B P... [more]
ATG4A_XENLA1.487e-2034.57Cysteine protease ATG4A OS=Xenopus laevis GN=atg4a... [more]
ATG4B_XENLA2.536e-2034.43Cysteine protease ATG4B OS=Xenopus laevis GN=atg4b... [more]
ATG4B_DANRE2.536e-2032.98Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE... [more]
ATG4A_BOVIN2.536e-2034.59Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=... [more]
ATG4B_MOUSE4.326e-2032.98Cysteine protease ATG4B OS=Mus musculus GN=Atg4b P... [more]
ATG4A_CHICK7.378e-2042.86Cysteine protease ATG4A OS=Gallus gallus GN=ATG4A ... [more]
ATG4_PHANO4.782e-1937.37Probable cysteine protease ATG4 OS=Phaeosphaeria n... [more]
ATG4B_CHICK1.391e-1842.86Cysteine protease ATG4B OS=Gallus gallus GN=ATG4B ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873139 ID=FC873139; Name=FC873139; organism=Citrus clementina; type=EST; length=808bp
GCTTGTTTAATTCTGCTTTCTCAGTCTTTGAAACGTATAGTGAGTCGTCA
GCTAGTGAAAAGAAGGCAGTTCATAATAAAAGTAATGGGTGGACAGCAGC
TGTGAAGAGACTAGTGACTGCTGGCTCAATGAGGAGAATACATGAACGTG
TACTAGGGCCGAGCAGGACTGGAATTTCTAGCTCAACCAGTGACATATGG
CTTCTTGGTGTGTGCCATAAAATTGCACAGGATGAGGCCTTGGGTGATGC
AGCTGGTAACAATGGATTAGCGGAATTCAATCAAGATTTTTCATCAAGAA
TTCTGATTTCATATCGTAAAGGTTTTGATCCTATTGGTGATTCAAAGATT
ACAAGTGATGTAGGCTGGGGTTGCATGCTTCGAAGTAGTCAGATGCTTGT
TGCACAGGCATTGCTTTTTCATCGATTGGGAAGACCTTGGAGAAAACCTT
TGCAGAAGCCATTTGATCGTGAATATGTTGAGATCTTGCACCTTTTTGGT
GATTCTGAGACATCACCTTTCTCCATTCACAATCTTCTTCAAGCTGGAAA
GGCTTATGGCCTTGCAGCTGGATCATGGGTTGGCCCATATGCCATGTGTC
GCTCATGGGAAGCTCTAGCTCGTTGTCAGAGAGCGGAAACTGGCCTTGGA
TGCCAGTCACTTCCAATGGCTATTTATGTTGTTTCAGGTGATGAAGATGG
GGAGCGAGGTGGAGCTCCAGTTGTGTGTATTGACGATGCATCTAGACATT
GTTCTGTGTTTTCAAAAGGTCAAGCTGACTGGACACCAATTCTTCTGCTT
GTTCCCTT
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