FC873139
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4_MEDTR (Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1) HSP 1 Score: 379.022 bits (972), Expect = 1.658e-104 Identity = 185/267 (69.29%), Postives = 209/267 (78.28%), Query Frame = 3 Query: 6 FNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806 F S FSV ETYSESS+SEKK VH++++GW AAV+++V+ GSMRR ERVLG RT +SSS DIWLLGVCHKI+Q F QDF SRILI+YRKGFD I DSK TSDV WGCMLRSSQMLVAQALLFH+LGR WRK + KP D+EY++IL LFGDSE + FSIHNLLQAGK YGLA GSWVGPYAMCR+WE LAR QR + G Q LPMAIYVVSGDEDGERGGAPVVCI+DA + C FS+G WTP+LLLVP Sbjct: 52 FTSGFSVDETYSESSSSEKKTVHSRNSGWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCHKISQHESTGDVDIRNVFAAFEQDFFSRILITYRKGFDAIEDSKYTSDVNWGCMLRSSQMLVAQALLFHKLGRSWRKTVDKPVDKEYIDILQLFGDSEAAAFSIHNLLQAGKGYGLAVGSWVGPYAMCRTWEVLARNQREKNEQGEQLLPMAIYVVSGDEDGERGGAPVVCIEDACKRCLEFSRGLVPWTPLLLLVP 318
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_ARATH (Cysteine protease ATG4a OS=Arabidopsis thaliana GN=ATG4A PE=2 SV=1) HSP 1 Score: 322.013 bits (824), Expect = 2.405e-87 Identity = 158/269 (58.74%), Postives = 201/269 (74.72%), Query Frame = 3 Query: 3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806 +F S+ SV + Y ESS S K V NGWTA VKR+ + +G++RR ERVLGP+RTG+ S+TSD+WLLGVC+KI+ DFSS+IL++YRKGF+P D+ TSDV WGCM+RSSQML AQALLFHRLGR W K + P ++EY+E L FGDSE S FSIHNL+ AG +YGLAAGSWVGPYA+CR+WE+LA +R +T Q+LPMA+++VSG EDGERGGAP++CI+DA++ C FSKGQ++WTPI+LLVP Sbjct: 46 VFTSSSSVSQPYRESSTSGHKQVCTTRNGWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLLGVCYKISADENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRSSQMLFAQALLFHRLGRAWTKKSELP-EQEYLETLEPFGDSEPSAFSIHNLIIAGASYGLAAGSWVGPYAICRAWESLACKKRKQTDSKNQTLPMAVHIVSGSEDGERGGAPILCIEDATKSCLEFSKGQSEWTPIILLVP 313
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_ORYSJ (Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B PE=2 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 4.246e-84 Identity = 153/270 (56.67%), Postives = 196/270 (72.59%), Query Frame = 3 Query: 3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806 +FNS F++FE + +SSA++ + S W+ ++R+V +GSM R LG S+ ++SD+W LG C+K++ F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WR+PL+KP++ EY+ ILH+FGDSE FSIHNLLQAG +YGLAAGSWVGPYAMCR+W+ L R R + + G +S PMA+YVVSGDEDGERGGAPVVCID A++ C F+KGQ+ W+PILLLVP Sbjct: 48 VFNSPFNIFEAHQDSSANKSPKSSSGSYDWSRVLRRIVCSGSMWRF----LGTSKV---LTSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRRPLEKPYNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLAAGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKGQSTWSPILLLVP 310
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_ARATH (Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1) HSP 1 Score: 310.071 bits (793), Expect = 9.459e-84 Identity = 152/266 (57.14%), Postives = 193/266 (72.56%), Query Frame = 3 Query: 12 SAFSVFETYSESSASEKKAVHNKSNGWTAAVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806 S+ V + E+S S V + WT +K + +G++RR +RVLGPSRTGISSSTS+IWLLGVC+KI++ F QDFSS IL++YR+GF+PIGD+ TSDV WGCMLRS QML AQALLF RLGR WRK +P D +Y+EIL LFGD+E S FSIHNL+ AG++YGLAAGSWVGPYA+CRSWE+LAR + ET +S MA+++VSG EDGERGGAP++CI+D ++ C FS+G+ +W PILLLVP Sbjct: 52 SSSPVSQLCREASTSGHNPVCTTHSSWTVILKTASMASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFSSLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLGRSWRKKDSEPADEKYLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYAVCRSWESLARKNKEETDDKHKSFSMAVHIVSGSEDGERGGAPILCIEDVTKTCLEFSEGETEWPPILLLVP 317
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_ORYSI (Cysteine protease ATG4A OS=Oryza sativa subsp. indica GN=ATG4A PE=3 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.235e-83 Identity = 156/270 (57.78%), Postives = 191/270 (70.74%), Query Frame = 3 Query: 3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806 +F+S FS+FE + +SSA H+ S W+ ++R+ GSM R LG S+ + ++SD+W LG C+K++ F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WRKP QKP+ EY+ ILH+FGDSE FSIHNLLQAGK+YGLAAGSWVGPYAMCR+W+ L R R E G + PMA+YVVSGDEDGERGGAPVVCID A++ C F+KGQ+ W+PILLLVP Sbjct: 44 VFSSPFSIFEAHQDSSAHRPLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAWQTLVRTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKGQSTWSPILLLVP 306
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_ORYSI (Cysteine protease ATG4B OS=Oryza sativa subsp. indica GN=ATG4B PE=1 SV=2) HSP 1 Score: 308.145 bits (788), Expect = 3.595e-83 Identity = 152/270 (56.30%), Postives = 194/270 (71.85%), Query Frame = 3 Query: 3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806 +FNS F++FE + +SSA++ + S W ++R+V +GSM R LG S+ ++SD+W LG C+K++ F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WR+P +KP++ EY+ ILH+FGDSE FSIHNLLQAG +YGLAAGSWVGPYAMCR+W+ L R R + + G +S PMA+YVVSGDEDGERGGAPVVCID A++ C F+KGQ+ W+PILLLVP Sbjct: 48 VFNSPFNIFEAHQDSSANKSPKSSSGSYDWLRVLRRIVCSGSMWRF----LGTSKV---LTSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRRPSEKPYNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLAAGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKGQSTWSPILLLVP 310
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_ORYSJ (Cysteine protease ATG4A OS=Oryza sativa subsp. japonica GN=ATG4A PE=3 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 2.330e-82 Identity = 154/270 (57.04%), Postives = 190/270 (70.37%), Query Frame = 3 Query: 3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806 +F+S FS+FE + +SSA+ H+ S W+ ++R+ GSM R LG S+ + ++SD+W LG C+K++ F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WRKP QKP+ EY+ ILH+FGDSE FSIHNLLQAGK+YGLAAGSWVGPYAMCR+W+ L R E G + PMA+YVVSGDEDGERGGAPVVCID A++ C F+K Q+ W+PILLLVP Sbjct: 45 VFSSPFSIFEAHQDSSANRSLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAWQTLVCTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKNQSTWSPILLLVP 307
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_MOUSE (Cysteine protease ATG4A OS=Mus musculus GN=Atg4a PE=2 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22 Identity = 65/195 (33.33%), Postives = 90/195 (46.15%), Query Frame = 3 Query: 285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQAD---------------------WTPILLLVP 806 D S+R+ +YR+ F PIG + +SD GWGCMLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G G + G W GP + + + LA + +A+YV + V I+D + C V G AD W P+LL+VP Sbjct: 48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWNWERQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVIKKLALFDEWNS--------LAVYVSMDN---------TVVIEDIKKMCCVLPVGAADPAGDFLTASNQSRDTSVPCSAWKPLLLIVP 225
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_HUMAN (Cysteine protease ATG4A OS=Homo sapiens GN=ATG4A PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21 Identity = 64/188 (34.04%), Postives = 92/188 (48.94%), Query Frame = 3 Query: 285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYV--VSGDEDGERGGAPVVCIDDA---SRHCSVFSKGQADWTPILLLVP 806 D S+R+ +YR+ F PIG + +SD GWGCMLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G G + G W GP A+ W +LA + + + + V +S D G+R + + + S +CS W P+LL+VP Sbjct: 48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSA-------WKPLLLIVP 228
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_BOVIN (Cysteine protease ATG4B OS=Bos taurus GN=ATG4B PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21 Identity = 71/197 (36.04%), Postives = 92/197 (46.70%), Query Frame = 3 Query: 285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALA-------RCQRAETGLGCQ-SLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKG------QADWTPILLLVP 806 D +SR+ +YRK F IG + TSD GWGCMLR QM+ AQAL+ LGR WR +K Y +L F D + S +SIH + Q G G + G W GP A+ +W ALA A+ C+ SLP A GA D+ RHC+ F G A W P++LL+P Sbjct: 45 DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYCSVLQAFLDRKDSCYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSALAVHVAMDNTVVMADIRRLCRSSLPCA-------------GAEAFPA-DSERHCNGFPAGAEGGGRAAPWRPLVLLIP 227 The following BLAST results are available for this feature:
BLAST of FC873139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873139 ID=FC873139; Name=FC873139; organism=Citrus clementina; type=EST; length=808bpback to top |