FC873162

Overview
NameFC873162
Unique NameFC873162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length155
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.912e-11
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            A VV EL+DDL K GHELSL+TGNA GRLACGVVGLTPV
Sbjct:  163 ALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 201
[Close]
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.912e-11
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            A VV EL+DDL K GHELSL+TGNA GRLACGVVGLTPV
Sbjct:  164 ALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 202
The following BLAST results are available for this feature:
BLAST of FC873162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SODCP_POPTM9.912e-1182.05Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]
SODCP_PEA9.912e-1182.05Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AD08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873162 ID=FC873162; Name=FC873162; organism=Citrus clementina; type=EST; length=155bp
AGCCTTTGTGGTTCTTGAGCTTGAGGATGACCTTGAAAAAAGTGGGCATG
AACTTAGTCTAACCACTGGTAATGCACGTGGAAGACTGGCTTGCGGTGTC
GTTGGCTTGACTCCAGTATGACATCCCCAAAACCCGCTGTGGTTGCACTA
TTTGC
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