FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CHLAA (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pth PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.613e-44
Identity = 90/186 (48.39%), Postives = 125/186 (67.20%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI-PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            WLIVGLGNPG++Y  TRHN+GF  VD +AE  G++       +   +G I    V+LAKPQT+MN SGQ+V ++ ++YKI P +++LVI+DDLDLPF+K+R+  +G  G HNGMRSI+    G+ EFPRLR+GIG+PPGKMD+ ++VL  F+  E   L     +  +AV ++L EG   A    N
Sbjct:    2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYN 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_THEFY (Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 81/180 (45.00%), Postives = 120/180 (66.67%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684
            WL+VGLGNPG +Y G RHNVGF +VD +A   G         A   +  +G+ PV+LAKP ++MN SG  V  + ++YK+P+ +++V+ D+LD+PF++++L   GG  GHNG+RSI     GS ++ R+R+GIGRPPG+MD+ +FVL+ FS  ER+ELD    +  +AV  ++  G  KA
Sbjct:   35 WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_EXIS2 (Peptidyl-tRNA hydrolase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=pth PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 80/164 (48.78%), Postives = 112/164 (68.29%), Query Frame = 1
Query:  151 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            IVGLGNPG +Y  TRHN+GF  +DA+A+  GI ++   FKA FG G I    V+L KP T+MN SG++V  ++ +YKI ++ VLVI+DDLDLP  KMRL  KG  GGHNG++S+I H  G+++  RL++G+GRPP  +  +++VL PF+K E+  L       V
Sbjct:    4 IVGLGNPGAKYTNTRHNIGFLAIDALAKEHGIKLTESKFKAVFGTGMIKGERVVLVKPLTYMNLSGEAVRPLLDFYKIAVEDVLVIYDDLDLPLEKMRLRSKGSAGGHNGVKSLIQHL-GTQDIKRLKLGVGRPPAPIQVIDWVLMPFAKSEQTTLQHVLSDSV 166          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_THETN (Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis GN=pth PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.143e-41
Identity = 87/185 (47.03%), Postives = 123/185 (66.49%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            ++I GLGNPGK+Y GTRHNVGF ++DA+++  GI VS + FK+  G+G      V+L KPQTFMN SG+++   V++YKIPL+ V+V++DD DL   K+R+  KG  GGHNGM SII +   S +FPR+RIGIG+P    D V  VL  FS +E++ +D   ++  EAV  ++  G   A +  N
Sbjct:    2 YIIAGLGNPGKEYEGTRHNVGFMVIDALSKKLGIEVSRLKFKSLMGEGHFKGEKVILLKPQTFMNLSGEALYDAVNFYKIPLENVIVVYDDKDLEVGKIRIRRKGSSGGHNGMNSII-YLLNSEDFPRVRIGIGKPEDG-DLVRHVLGRFSDEEKKVIDEAVERAAEAVIDIMENGIEHAMSRFN 184          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLONN (Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.814e-40
Identity = 83/188 (44.15%), Postives = 123/188 (65.43%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +LIVGLGNPGK+Y  TRHNVGF+++D I+E   I ++   FK  +G G I N  V+L KP T+MN SG+S+  +  +YKIP + V+VI+DD+ L   +MR+  KG  GGHNG+++II HF GS  FPR+++G+G+P  + D V+ VL  F+K +R+ L   F+   +A   ++ +G  +A    N  K
Sbjct:    2 FLIVGLGNPGKEYEHTRHNVGFDIIDVISEKYNIDLNKKKFKGMYGDGTIANEKVILLKPLTYMNLSGESIKEVTDFYKIPKENVIVIYDDISLEVGRMRIREKGSAGGHNGIKNIIAHF-GSDVFPRIKVGVGQPV-QRDLVSHVLGKFNKDDREILSKVFEAASDAAENIIEKGTAEAMNKFNGFK 187          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SYNJB (Peptidyl-tRNA hydrolase OS=Synechococcus sp. GN=pth PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.369e-40
Identity = 90/196 (45.92%), Postives = 119/196 (60.71%), Query Frame = 1
Query:  118 KPKQQQQHPW-LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            KPK+  +    L+VGLGNPG QY  TRHN GF +VD +A+  GI  V    F+  +G+GF       L KP+T+MN SGQSV +++ +YK+ L  VLV++DD+DLP  ++RL   G  GGHNGM+SII H  GS  FPRLR+G+G+P G  D V  VL  F+  E++ L+      VEAV     EG   A    N
Sbjct:    5 KPKEVDEISLQLVVGLGNPGPQYANTRHNCGFMVVDRLAQRWGIPLVLEKRFQGSYGEGFALGGKRRLLKPETYMNRSGQSVRAVLDWYKLDLASVLVVYDDMDLPLGRLRLRGSGSAGGHNGMKSIIQHL-GSEAFPRLRLGVGKPKGSQDVVGHVLGGFAPAEQEVLERVLDVAVEAVECCWQEGLRTAMNRFN 199          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACP2 (Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strain SAFR-032) GN=pth PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.369e-40
Identity = 83/174 (47.70%), Postives = 112/174 (64.37%), Query Frame = 1
Query:  154 VGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGF 675
            VGLGNPGK+Y  TRHNVGF  +D +++   I ++   F   FG GF+    V+L KP T+MN SG+ V  ++ YY IPL+ + VI+DDLDLP  ++RL  KG  GGHNG++S+I H  GS EF R RIGIGRP   M  V++VL  FS++E+ ++    Q  VEA    L + F
Sbjct:    5 VGLGNPGKEYEKTRHNVGFMTIDELSKKWDIPLNQSKFHGQFGTGFVSGQKVLLVKPLTYMNLSGECVRPLMDYYDIPLEHLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSLIQHL-GSPEFDRFRIGIGRPQNGMKVVDYVLGRFSEEEQPDIASAIQASVEACEAALTKPF 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SYNJA (Peptidyl-tRNA hydrolase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pth PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.041e-40
Identity = 86/185 (46.49%), Postives = 114/185 (61.62%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LIVGLGNPG QY  TRHN GF +VD +AE  GI ++    F+  +G+GF       L KP+T+MN SG++V +++ +YK+    VLV++DD+DLP  ++RL   G  GGHNGM+S+I+H  GS  FPRLR+G+GRP G  D V  VL  F   E+  LD   +  V AV   L EG   A    N
Sbjct:   16 LIVGLGNPGPQYANTRHNCGFMVVDQLAERWGIPLALEKRFQGSYGEGFALGGKRRLLKPETYMNRSGEAVRAVLDWYKLDPASVLVVYDDMDLPLGRLRLRGSGSAGGHNGMKSVIEHL-GSEAFPRLRLGVGRPKGNQDRVGHVLGSFEPAEQAVLDRVLRAAVAAVECCLQEGLKTAMNRFN 199          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRASC (Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3) GN=pth PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.893e-40
Identity = 78/181 (43.09%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684
            PWL+ GLGNPG  Y G RHN GF +VD +AE  G  + S   +A   +  +     +LA+P +FMN SG  V +  S+YK+ + +++V+ D+LD+PF  +RL   GG  GHNG+RSI     G+R++ R+R+GIGRPPG+MD  +FVLR F+  ER+EL    +   ++V +L+ +G   A
Sbjct:   10 PWLVAGLGNPGPTYAGNRHNAGFMVVDLLAERTGSRLKSHRSRADVAETRLAGARAVLARPLSFMNLSGGPVAAARSFYKVEVSRLIVVHDELDIPFGAVRLKRGGGDNGHNGLRSISSAL-GTRDYLRVRVGIGRPPGRMDPADFVLRDFTSTERRELPLLLEHAADSVEMLIADGLEPA 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ANASK (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (strain K) GN=pth PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.893e-40
Identity = 82/184 (44.57%), Postives = 122/184 (66.30%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            L+VGLGNPG++Y  TRHNVGF + D +A+  G S S+  F A   +  +G   V + KPQT+MN SG++VG+ + ++K+ L  ++V+ DDL+L   +++L   GGHGGHNG++S+  H  GS E+ R+R+G+GRPP +MD  ++VL  F+K E  ELD   +Q VEA R+ +  G  +A   VN
Sbjct:    3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARLGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSVNAHV-GSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELGAARAMNQVN 185          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_CHLAA4.613e-4448.39Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacu... [more]
PTH_THEFY1.641e-4145.00Peptidyl-tRNA hydrolase OS=Thermobifida fusca (str... [more]
PTH_EXIS21.641e-4148.78Peptidyl-tRNA hydrolase OS=Exiguobacterium sibiric... [more]
PTH_THETN2.143e-4147.03Peptidyl-tRNA hydrolase OS=Thermoanaerobacter teng... [more]
PTH_CLONN1.814e-4044.15Peptidyl-tRNA hydrolase OS=Clostridium novyi (stra... [more]
PTH_SYNJB2.369e-4045.92Peptidyl-tRNA hydrolase OS=Synechococcus sp. GN=pt... [more]
PTH_BACP22.369e-4047.70Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strai... [more]
PTH_SYNJA4.041e-4046.49Peptidyl-tRNA hydrolase OS=Synechococcus sp. (stra... [more]
PTH_FRASC6.893e-4043.09Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI... [more]
PTH_ANASK6.893e-4044.57Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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