FC873342
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2) HSP 1 Score: 336.265 bits (861), Expect = 1.324e-91 Identity = 161/202 (79.70%), Postives = 183/202 (90.59%), Query Frame = 1 Query: 118 KPKQQQ-QHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKPMEQ 720 KPK Q PWLIVGLGNPGK+Y GTRHNVGFEMVDA+A+AEGIS+++VNFKA FGKG IGN+P+MLAKPQTFMN SG+SVG IVS+YKIPLKQVLV++DDLDLPF K+RLLPKGGHGGHNGMRSIID KGSR+FPRLRIGIGRPPGKMD+ NFVLR F++QE++ELD TFQ G+EA+RILLLEGFNK+ATFVNT K MEQ Sbjct: 85 KPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNTRKSMEQ 286
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 3.491e-84 Identity = 145/192 (75.52%), Postives = 172/192 (89.58%), Query Frame = 1 Query: 142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKPME 717 PWL VGLGNPGK Y GTRHNVGFEM+D IAEAEGIS+SS+ FKA GKG IG+ P+MLAKPQTFMNASG+SVG +VSY+KIPL QVLV++DDLDLPF+K+RLLPKGGHGGHNG+RSII+H K +R+FPRLRIGIGRPPGKMD NFVLRPF+++E++ELDF F +G+EAVRI+ LEGFNK+AT+VNTA+ E Sbjct: 55 PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQSSE 246
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 3.291e-58 Identity = 99/186 (53.23%), Postives = 142/186 (76.34%), Query Frame = 1 Query: 142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699 PWL +GLGNPG +Y GTRHN+GFEM+D AE+ GI ++ VNFKA G+GF+ ++PV+LAKPQT+MN SG+S G + +YYK+PL +VLV+ DD+ LP +RL KGGHG HNG++S+++HF+G+REF RLRIGIG+PPG+MD F+L+ FS R+ +D +GV+A++++L + F ++ N Sbjct: 18 PWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFN 203
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.250e-57 Identity = 100/179 (55.87%), Postives = 138/179 (77.09%), Query Frame = 1 Query: 142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFN 678 PWLI GLGNPG +Y GTRHNVGFEMVD IA EGI+++++ K+ G G IG VPV++ KPQ++MN SG+++G + +YY++PL+ +L+I+DD LP +RL KGGHG HNG++++I+H G REFPRL IGIG PPGKMD F+L+ FS +ER ++D +QGV+AVR L+L+GF+ Sbjct: 61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 239
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 8.105e-57 Identity = 99/186 (53.23%), Postives = 141/186 (75.81%), Query Frame = 1 Query: 142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699 PWLIVGLGNPG +Y+GTRHNVGFEM+D +A EG+ ++++ KA G G I +VP++LAKPQT+MN SG+SVGS+ S+Y++PL+ +L+I+D++ LP +RL PKGG G HNG++S++ H G R FPRL IGIG+PPG MD F+L+ FS E+++++ +QG EAV+ L+L GFN+ + N Sbjct: 45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFN 230
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 6.861e-56 Identity = 97/188 (51.60%), Postives = 142/188 (75.53%), Query Frame = 1 Query: 115 PKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFN 678 P + + PWLI GLGNPG +Y+GTRHNVGFEMVD IA EGI+++++ K+ G G IG VPV+L KPQ+++N SG+++G + +YY++PL+ +LV++D++ LP +RL KGGHG HNG++++++ SRE PRL IGIG PPGKMD+ F+L+ FS +ER ++D +QGV+AVR L+L+GF+ Sbjct: 55 PAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFS 242
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 3.765e-54 Identity = 97/186 (52.15%), Postives = 135/186 (72.58%), Query Frame = 1 Query: 142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699 PWLIVGLGNPG +Y GTRHN+GFEM+D IA A IS++++ KA G G +G VP++L KPQ +MN SG+SVG + +YY+IPL+ +L+I+DD+ L +RL PKGGH HNG++++ +H G R +PRL IGIG PPG MD F+L+ FS ER+++D +QGVE V+ L+ EGF+ + + N Sbjct: 51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFN 236
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CARHZ (Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 9.295e-45 Identity = 94/185 (50.81%), Postives = 126/185 (68.11%), Query Frame = 1 Query: 145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699 ++I GLGNPG++Y TRHN GF +VD +A+ GI ++ FK+ G+G I V V+L KPQT+MN SG +V VS+YK+PL +++V++DDLDLP K+RL KG GGH GM SII GS E PRL+IGIGR P D ++VL+PF+ ER+ L+ T + EA+ + L EGFNKA T N Sbjct: 2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKPQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAMTDFN 184
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CHLAD (Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.704e-44 Identity = 89/186 (47.85%), Postives = 125/186 (67.20%), Query Frame = 1 Query: 145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI-PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699 WLIVGLGNPG++Y TRHN+GF V+ +AE G++ + K+ +G I V L KPQT+MN SGQ+V ++ +YKI P +++LVI+DDLDLPF+K+RL +G G HNGMRSI+ G+ EFPRLRIGIG+PPG+MD+ ++VL F+ +E L + +AV +++ EG A N Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKPQTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAAMNRYN 186
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CHLSY (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 4.613e-44 Identity = 90/186 (48.39%), Postives = 125/186 (67.20%), Query Frame = 1 Query: 145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI-PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699 WLIVGLGNPG++Y TRHN+GF VD +AE G++ + +G I V+LAKPQT+MN SGQ+V ++ ++YKI P +++LVI+DDLDLPF+K+R+ +G G HNGMRSI+ G+ EFPRLR+GIG+PPGKMD+ ++VL F+ E L + +AV ++L EG A N Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYN 186 The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bpback to top |