FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SOLUE (Peptidyl-tRNA hydrolase OS=Solibacter usitatus (strain Ellin6076) GN=pth PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.030e-35
Identity = 82/189 (43.39%), Postives = 115/189 (60.85%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKP 711
            +L+ GLGNPG+QY  + HN+GF +VD +AE  GI V+  + KA  G G I    VMLAKPQTFMN SG+S+  ++  ++I +  ++VI+D+LDLP+  +++ PKG   GHNGM+S+I  FK S E  R+R+GI           FVL P  + + +ELD       +AVR +  EG  KA T  N   P
Sbjct:    2 FLLAGLGNPGEQYALSPHNLGFLVVDRLAEQFGIRVTRKDSKALIGLGEIDGHQVMLAKPQTFMNLSGESLAPLMEKHQIEISNLVVIYDELDLPWGALKIKPKGSAAGHNGMKSVIQWFKTS-EIVRVRLGIHPGHPIRSGAEFVLAPIKRSQMKELDEFVGFAADAVRTITAEGVEKAMTKFNRRAP 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRA5 (Peptidyl-tRNA hydrolase OS=Streptococcus agalactiae serotype V GN=pth PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQE 606
            +IVGLGNPG +YN T+HN+GF  VD I +   ++ +   NFKA  G  FI    +   KP TFMN SG +V ++++YY I +K +++I+DDLD+   K+R   KG  GGHNG++SII H  G++EF R+++GIGRP G+M  +N VL  F K +
Sbjct:    4 MIVGLGNPGSKYNDTKHNIGFMAVDRIVKDLDVNFTEDKNFKAEIGSDFINGEKIYFIKPTTFMNNSGIAVKALLTYYNISIKDMIIIYDDLDMEVGKIRFRQKGSAGGHNGIKSIIAHL-GTQEFDRIKVGIGRPNGRMTVINHVLGKFDKND 156          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRA3 (Peptidyl-tRNA hydrolase OS=Streptococcus agalactiae serotype III GN=pth PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQE 606
            +IVGLGNPG +YN T+HN+GF  VD I +   ++ +   NFKA  G  FI    +   KP TFMN SG +V ++++YY I +K +++I+DDLD+   K+R   KG  GGHNG++SII H  G++EF R+++GIGRP G+M  +N VL  F K +
Sbjct:    4 MIVGLGNPGSKYNDTKHNIGFMAVDRIVKDLDVNFTEDKNFKAEIGSDFINGEKIYFIKPTTFMNNSGIAVKALLTYYNISIKDMIIIYDDLDMEVGKIRFRQKGSAGGHNGIKSIIAHL-GTQEFDRIKVGIGRPNGRMTVINHVLGKFDKND 156          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCGI (Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (strain PYR-GCK) GN=pth PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 79/192 (41.15%), Postives = 113/192 (58.85%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGF------IGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG QY  TRHN+GF + D +A+  G +     FK H   G       +   PV+LAKP+ +MN SG+ VG +  +Y I    V++I D+LD+ F ++RL   GG  GHNG+RS +     + +F R+R+GIGRPPG+    +FVL PF+ +ER EL    +Q  +A  +L+  G   A   V+
Sbjct:    4 PVLVVGLGNPGPQYATTRHNIGFMVADVLADRMGET-----FKVHKKSGAEVTTGRLAGRPVVLAKPRVYMNESGRQVGPLAKFYSIAPTDVVIIHDELDIDFGRIRLKAGGGVAGHNGLRS-VGSALSTNDFQRVRVGIGRPPGQKSGASFVLEPFNSRERPELGTIIEQAADATELLIELGIEPAQNTVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MOOTA (Peptidyl-tRNA hydrolase OS=Moorella thermoacetica (strain ATCC 39073) GN=pth PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 78/175 (44.57%), Postives = 112/175 (64.00%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEG 672
            ++VGLGNPG +Y  TRHN GF +VD +A+  GI++     +A  G+G +GN  V+L KPQT+MN SGQ+V  +  +Y I  + +LVI DDLDL   ++RL   G  GGH G++SII H  G+   PRL+IGIGRPP   + +++VL+PFS+ + + +     +   A R LL  G
Sbjct:    6 MVVGLGNPGPRYATTRHNAGFMVVDLLADDLGITLDRTREQALTGQGLVGNNRVLLVKPQTYMNNSGQAVAPLARWYGIAPEAILVIHDDLDLAPGRLRLRRGGSSGGHRGLQSIITHL-GTTAVPRLKIGIGRPPLGQNVIDYVLKPFSEGDWELIRPVLLEAARAARFLLEGG 179          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_LISMO (Peptidyl-tRNA hydrolase OS=Listeria monocytogenes GN=pth PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            LI GLGNPGK+Y  TRHNVGF +VD ++           F     +  +G   ++L KP TFMNASG+ +  ++ YY IP++ V++++DDLDLP  K+RL  KG  GGHNGM+SII H K ++EF R+R+G+ RP  K + +N+VL  F K E+ ++    Q+  +A+
Sbjct:    3 LIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVK-TQEFNRIRVGVSRPL-KGEVINYVLGDFPKAEQPDIIAAIQKSADAI 168          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOK5 (Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=pth PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 75/188 (39.89%), Postives = 123/188 (65.43%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +LIVGLGN G +Y+ TRHN+GF+ +D +++   I+++   FK ++G+GFIG   V+L KP T+MN SG+SV   V++YKI   ++++I+DD+D+   + R+  +G  GGHNG+++II +  G+  FPR++IGIG P   +D V++VL  FS+ +R  ++   +  VEA+  ++  G   A    N  K
Sbjct:    2 FLIVGLGNIGVKYHRTRHNIGFDFIDLVSKKYNITLNREKFKGNYGEGFIGQNKVILLKPGTYMNLSGESVREAVNFYKIENDRMIIIYDDIDIDIGRFRIRHRGSAGGHNGIKNIILNL-GTDVFPRIKIGIGHP--NVDLVSYVLGKFSEDDRINIEKVLKTSVEALECIMDFGIEVAMNKFNGFK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOK1 (Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (strain NBRC 12016) GN=pth PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 75/188 (39.89%), Postives = 123/188 (65.43%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +LIVGLGN G +Y+ TRHN+GF+ +D +++   I+++   FK ++G+GFIG   V+L KP T+MN SG+SV   V++YKI   ++++I+DD+D+   + R+  +G  GGHNG+++II +  G+  FPR++IGIG P   +D V++VL  FS+ +R  ++   +  VEA+  ++  G   A    N  K
Sbjct:    2 FLIVGLGNIGVKYHRTRHNIGFDFIDLVSKKYNITLNREKFKGNYGEGFIGQNKVILLKPGTYMNLSGESVREAVNFYKIENDRMIIIYDDIDIDIGRFRIRHRGSAGGHNGIKNIILNL-GTDVFPRIKIGIGHP--NVDLVSYVLGKFSEDDRINIEKVLKTSVEALECIMDFGIEVAMNKFNGFK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACSK (Peptidyl-tRNA hydrolase OS=Bacillus clausii (strain KSM-K16) GN=pth PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 74/176 (42.05%), Postives = 115/176 (65.34%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGF 675
            L+VGLGNPGK+Y  TRHN+GF+++D  A+   + +    FKA +G+  IG+  V+L KP T+MN SG++V   + Y+ I   +++VI+DDLDLP  K+RL  KG  GGHNG++S+I H  G+ +F R+R+GIGRP      V++VL  + K+E   ++   ++  +A+   L + F
Sbjct:    3 LVVGLGNPGKKYEHTRHNIGFDIIDRCAQKLDLPLDKQKFKAIYGEKRIGSEKVVLLKPLTYMNLSGEAVRPFMDYFNISNDELVVIYDDLDLPVGKIRLRKKGSAGGHNGIKSLIAHL-GTEDFNRIRVGIGRPAHGEPVVHYVLDTYRKEELAFMNEAAEKSAKAIEAWLEKPF 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRPZ (Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=pth PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.757e-35
Identity = 76/175 (43.43%), Postives = 112/175 (64.00%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLE 669
            +IVGLGNPG +Y  T+HN+GF  +D I +   ++ +   NFKA  G  FI +  V   KP TFMN SG +V ++++YY I +  ++VI+DDLD+  SK+RL  KG  GGHNG++SII H  G++EF R+++GIGRP   M  +N V+  F+ ++   +  T  + V AV+  L E
Sbjct:    4 MIVGLGNPGSKYEKTKHNIGFMAIDNIVKNLDVTFTDDKNFKAQIGSTFINHEKVYFVKPTTFMNNSGIAVKALLTYYNIDITDLIVIYDDLDMEVSKLRLRSKGSAGGHNGIKSIIAHI-GTQEFNRIKVGIGRPLKGMTVINHVMGQFNTEDNIAISLTLDRVVNAVKFYLQE 177          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_SOLUE1.030e-3543.39Peptidyl-tRNA hydrolase OS=Solibacter usitatus (st... [more]
PTH_STRA51.345e-3546.75Peptidyl-tRNA hydrolase OS=Streptococcus agalactia... [more]
PTH_STRA31.345e-3546.75Peptidyl-tRNA hydrolase OS=Streptococcus agalactia... [more]
PTH_MYCGI1.345e-3541.15Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (s... [more]
PTH_MOOTA1.345e-3544.57Peptidyl-tRNA hydrolase OS=Moorella thermoacetica ... [more]
PTH_LISMO1.345e-3544.05Peptidyl-tRNA hydrolase OS=Listeria monocytogenes ... [more]
PTH_CLOK51.345e-3539.89Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (s... [more]
PTH_CLOK11.345e-3539.89Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (s... [more]
PTH_BACSK1.345e-3542.05Peptidyl-tRNA hydrolase OS=Bacillus clausii (strai... [more]
PTH_STRPZ1.757e-3543.43Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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