FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STACT (Peptidyl-tRNA hydrolase OS=Staphylococcus carnosus (strain TM300) GN=pth PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 72/167 (43.11%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  151 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            IVGLGN GK++  T+HN+GFE++D + E+    +    F+  +    +G   V+L +P T MN SG++VG ++ YY +  + +LV++DDLDLP  ++RL  KG  GGHNGM+SII H  G+  F R+RIGIGRP   M   ++VL+ FSKQE + ++   +    AV
Sbjct:    4 IVGLGNIGKRFEQTKHNIGFEVIDYLLESNQFKLDKQKFRGAYTIERLGGEKVLLIEPMTMMNLSGEAVGPLMDYYNVDPEDLLVLYDDLDLPQGQVRLRQKGSAGGHNGMKSIIQHL-GTDNFKRIRIGIGRPTNGMSVPDYVLQKFSKQEMETMNKVIEHSAHAV 169          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCTU (Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculosis GN=pth PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 79/192 (41.15%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHN+GF + D +A   G       FKAH         G      ++LAKP+ +MN SG+ +G +  +Y +    ++VI DDLDL F ++RL   GG GGHNG+RS++    G+++F R+RIGIGRPPG+ D   FVL  F+  ER E+    +Q  +A  +L+ +G   A   V+
Sbjct:    4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLG-----AKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCTA (Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pth PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 79/192 (41.15%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHN+GF + D +A   G       FKAH         G      ++LAKP+ +MN SG+ +G +  +Y +    ++VI DDLDL F ++RL   GG GGHNG+RS++    G+++F R+RIGIGRPPG+ D   FVL  F+  ER E+    +Q  +A  +L+ +G   A   V+
Sbjct:    4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLG-----AKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCBT (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pth PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 79/192 (41.15%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHN+GF + D +A   G       FKAH         G      ++LAKP+ +MN SG+ +G +  +Y +    ++VI DDLDL F ++RL   GG GGHNG+RS++    G+++F R+RIGIGRPPG+ D   FVL  F+  ER E+    +Q  +A  +L+ +G   A   V+
Sbjct:    4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLG-----AKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCBP (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pth PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 79/192 (41.15%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHN+GF + D +A   G       FKAH         G      ++LAKP+ +MN SG+ +G +  +Y +    ++VI DDLDL F ++RL   GG GGHNG+RS++    G+++F R+RIGIGRPPG+ D   FVL  F+  ER E+    +Q  +A  +L+ +G   A   V+
Sbjct:    4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLG-----AKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCBO (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=pth PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 79/192 (41.15%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHN+GF + D +A   G       FKAH         G      ++LAKP+ +MN SG+ +G +  +Y +    ++VI DDLDL F ++RL   GG GGHNG+RS++    G+++F R+RIGIGRPPG+ D   FVL  F+  ER E+    +Q  +A  +L+ +G   A   V+
Sbjct:    4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLG-----AKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CALS8 (Peptidyl-tRNA hydrolase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=pth PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 73/185 (39.46%), Postives = 115/185 (62.16%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            ++I GLGNPG++Y  TRHN GF  +D +A+A    V  + FK   G     +  V+L KP T+MN+SG S+   V++YK+  ++++VI+DD+      +++  KG  GGHNG++SII    G+ EFPR+RIGIG P  K D V +VL  F   E+Q++    ++  + ++ILL  G ++A  ++N
Sbjct:    3 YIIAGLGNPGERYTFTRHNAGFLAIDYLAQAFNTKVDKIKFKGLTGSFEYADKKVLLLKPMTYMNSSGDSIVEAVNFYKVKPEKLIVIYDDIAFDVGVVKMRKKGSDGGHNGVKSIIQRL-GTEEFPRIRIGIGVP--KEDMVKYVLSEFEDYEKQKIFRAIEKAAQGIKILLESGIDRAMNYIN 184          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SYMTH (Peptidyl-tRNA hydrolase OS=Symbiobacterium thermophilum GN=pth PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.914e-35
Identity = 81/187 (43.32%), Postives = 111/187 (59.36%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVP--VMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            LIVGLGNPG +Y  TRHN G+ ++DA A   G+++    F+  +G+   G     V+L KP T+MN SG+SV     +Y+I    +LV+FDDLDL   ++RL  KG  GGHNG++S+I    G+ EFPRLRIGIGRP    + +++VL PF   +   +     + VEAV   L EG   A    NT
Sbjct:    4 LIVGLGNPGPRYAATRHNAGWMLLDAFARKHGVAIEQRGFEGLYGELRWGAEAEKVILLKPLTYMNLSGRSVAQAARFYRIAPADILVLFDDLDLEPGRLRLRAKGSAGGHNGVKSVIAEL-GTAEFPRLRIGIGRPAPGWEVIDWVLAPFGPDDAAAVAAALPRAVEAVECFLTEGILAAMNRYNT 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ANADF (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=pth PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.914e-35
Identity = 76/184 (41.30%), Postives = 115/184 (62.50%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            L+VGLGNPG +Y  TRHNVGF + D +A A     +   F +   +G  G   V + KPQT+MN SG+SVGS + ++K+ L+ ++V+ DDL+L   +++L   GGHGGHNG++S+  H  G  ++ R+R+G+GRPP +MD  ++VL  F+K +   L+    +  EA R+ +  G  KA   VN
Sbjct:    3 LVVGLGNPGPEYARTRHNVGFLVADRLALALRAEFTLRKFASELAEGRAGGERVWIMKPQTYMNHSGESVGSALHFWKLGLEDLVVVHDDLELEPFRVQLKVGGGHGGHNGLKSVNAHV-GGPDYARVRVGVGRPPPRMDPADYVLGRFAKADEAPLEECLVRATEAARLAIELGAAKAMNQVN 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_LISMH (Peptidyl-tRNA hydrolase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=pth PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 73/168 (43.45%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            LI GLGNPGK+Y  TRHNVGF +VD ++           F     +  +G   ++L KP TFMNASG+ +  ++ YY IP++ V++++DDLDLP  K+RL  KG  GGHNGM+SII H K ++EF R+R+G+ RP  K + +++VL  F K E+ ++    Q+  +A+
Sbjct:    3 LIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVK-TQEFNRIRVGVSRPL-KGEVIHYVLGDFPKAEQPDIIAAIQKSADAI 168          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_STACT2.997e-3543.11Peptidyl-tRNA hydrolase OS=Staphylococcus carnosus... [more]
PTH_MYCTU2.997e-3541.15Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculo... [more]
PTH_MYCTA2.997e-3541.15Peptidyl-tRNA hydrolase OS=Mycobacterium tuberculo... [more]
PTH_MYCBT2.997e-3541.15Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (st... [more]
PTH_MYCBP2.997e-3541.15Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (st... [more]
PTH_MYCBO2.997e-3541.15Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=... [more]
PTH_CALS82.997e-3539.46Peptidyl-tRNA hydrolase OS=Caldicellulosiruptor sa... [more]
PTH_SYMTH3.914e-3543.32Peptidyl-tRNA hydrolase OS=Symbiobacterium thermop... [more]
PTH_ANADF3.914e-3541.30Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (s... [more]
PTH_LISMH5.112e-3543.45Peptidyl-tRNA hydrolase OS=Listeria monocytogenes ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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