FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_LISMF (Peptidyl-tRNA hydrolase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=pth PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 73/168 (43.45%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            LI GLGNPGK+Y  TRHNVGF +VD ++           F     +  +G   ++L KP TFMNASG+ +  ++ YY IP++ V++++DDLDLP  K+RL  KG  GGHNGM+SII H K ++EF R+R+G+ RP  K + +++VL  F K E+ ++    Q+  +A+
Sbjct:    3 LIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVK-TQEFNRIRVGVSRPL-KGEVIHYVLGDFPKAEQPDIIAAIQKSADAI 168          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_LISMC (Peptidyl-tRNA hydrolase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=pth PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 73/168 (43.45%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            LI GLGNPGK+Y  TRHNVGF +VD ++           F     +  +G   ++L KP TFMNASG+ +  ++ YY IP++ V++++DDLDLP  K+RL  KG  GGHNGM+SII H K ++EF R+R+G+ RP  K + +++VL  F K E+ ++    Q+  +A+
Sbjct:    3 LIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVK-TQEFNRIRVGVSRPL-KGEVIHYVLGDFPKAEQPDIIAAIQKSADAI 168          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_KINRD (Peptidyl-tRNA hydrolase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=pth PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVP-------VMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684
            WL+VGLGNPG +Y  TRHNVG  ++D +A     S       A   +  +G  P       V+LA P ++MN SG  V  +  Y+ + ++ ++V+ D+LD+PF  +RL   GG GGHNG+RSI     G +++ R+R+GIGRPPG+ D  +FVL+ FS  E++++ F      +AV  L+++GF  A
Sbjct:    5 WLVVGLGNPGAEYERTRHNVGQMVLDELASRTRGSFKRHRTGARTAEVRLGVAPGGAPGPRVVLAAPTSYMNVSGGPVAGLAKYFDVDVEHLVVVHDELDVPFGSVRLKRGGGEGGHNGLRSISKSL-GDKDYARVRVGIGRPPGRQDPADFVLKEFSSTEKKDMPFLVMDAADAVEELVIKGFEAA 190          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ARTAT (Peptidyl-tRNA hydrolase OS=Arthrobacter aurescens (strain TC1) GN=pth PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 74/190 (38.95%), Postives = 117/190 (61.58%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEG--ISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            WLIVGLGNPG +Y+  RHNVG  ++D +A   G    V     +   G+  IG   V+LAKP T+MN SG  V  + +++ I    V+ + D++D+PF+ ++L   GG GGHNG+R  I     ++++ R+R+G+GRPPG+M++ ++VLR F+  E++EL F   +  +AV +L+ +G   A    + AK
Sbjct:    5 WLIVGLGNPGSEYSNNRHNVGQMVLDELASRMGGKFKVHKARAQVVEGRLGIGGPRVVLAKPMTYMNVSGGPVAGLCNFFDIAPDHVIAVHDEIDIPFNTVKLKMGGGEGGHNGLRD-ISKALATKDYLRVRVGVGRPPGRMETADYVLRDFATAEKKELPFLLDEAADAVELLMDQGLLAAQQKHHPAK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRPG (Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=pth PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 75/175 (42.86%), Postives = 112/175 (64.00%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLE 669
            +IVGLGNPG +Y  T+HN+GF  +D I +   ++ +   NFKA  G  FI +  V   KP TFMN SG +V ++++YY I +  ++VI+DDLD+  SK+RL  KG  GGHNG++SII H  G++EF R+++GIGRP   M  ++ V+  F+ ++   +  T  + V AV+  L E
Sbjct:    4 MIVGLGNPGSKYEKTKHNIGFMAIDNIVKNLDVTFTDDKNFKAQIGSTFINHEKVYFVKPTTFMNNSGIAVKALLTYYNIDITDLIVIYDDLDMEVSKLRLRSKGSAGGHNGIKSIIAHI-GTQEFNRIKVGIGRPLKGMTVISHVMGQFNTEDNIAISLTLDRVVNAVKFYLQE 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRPF (Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=pth PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 75/175 (42.86%), Postives = 112/175 (64.00%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLE 669
            +IVGLGNPG +Y  T+HN+GF  +D I +   ++ +   NFKA  G  FI +  V   KP TFMN SG +V ++++YY I +  ++VI+DDLD+  SK+RL  KG  GGHNG++SII H  G++EF R+++GIGRP   M  ++ V+  F+ ++   +  T  + V AV+  L E
Sbjct:    4 MIVGLGNPGSKYEKTKHNIGFMAIDNIVKNLDVTFTDDKNFKAQIGSTFINHEKVYFVKPTTFMNNSGIAVKALLTYYNIDITDLIVIYDDLDMEVSKLRLRSKGSAGGHNGIKSIIAHI-GTQEFNRIKVGIGRPLKGMTVISHVMGQFNTEDNIAISLTLDRVVNAVKFYLQE 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRP8 (Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes serotype M18 GN=pth PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 75/175 (42.86%), Postives = 112/175 (64.00%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLE 669
            +IVGLGNPG +Y  T+HN+GF  +D I +   ++ +   NFKA  G  FI +  V   KP TFMN SG +V ++++YY I +  ++VI+DDLD+  SK+RL  KG  GGHNG++SII H  G++EF R+++GIGRP   M  ++ V+  F+ ++   +  T  + V AV+  L E
Sbjct:    4 MIVGLGNPGSKYEKTKHNIGFMAIDNIVKNLDVTFTDDKNFKAQIGSTFINHEKVYFVKPTTFMNNSGIAVKALLTYYNIDITDLIVIYDDLDMEVSKLRLRSKGSAGGHNGIKSIIAHI-GTQEFNRIKVGIGRPLKGMTVISHVMGQFNTEDNIAISLTLDRVVNAVKFYLQE 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRP6 (Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes serotype M6 GN=pth PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 75/175 (42.86%), Postives = 112/175 (64.00%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLE 669
            +IVGLGNPG +Y  T+HN+GF  +D I +   ++ +   NFKA  G  FI +  V   KP TFMN SG +V ++++YY I +  ++VI+DDLD+  SK+RL  KG  GGHNG++SII H  G++EF R+++GIGRP   M  ++ V+  F+ ++   +  T  + V AV+  L E
Sbjct:    4 MIVGLGNPGSKYEKTKHNIGFMAIDNIVKNLDVTFTDDKNFKAQIGSTFINHEKVYFVKPTTFMNNSGIAVKALLTYYNIDITDLIVIYDDLDMEVSKLRLRSKGSAGGHNGIKSIIAHI-GTQEFNRIKVGIGRPLKGMTVISHVMGQFNTEDNIAISLTLDRVVNAVKFYLQE 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRAW (Peptidyl-tRNA hydrolase OS=Streptomyces avermitilis GN=pth PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 77/193 (39.90%), Postives = 115/193 (59.59%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIG-----NVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            PWLIVGLGNPG +Y   RHNVGF + D +AE  G         +A   +G IG     N  V+LAKP ++MN SG  V ++  +YK+P+  ++ + D+LD+ +  +RL   GG  GHNG++S+        ++ R+R GIGRPPG+M   +FVL+ F+  ER+ELD+   +  +A   L++EG  +A    N+
Sbjct:   13 PWLIVGLGNPGPEYARNRHNVGFMVADLLAERIGGKFKRAGKAQAQVIEGRIGPPGPANRRVILAKPMSYMNLSGGPVNALREFYKVPVANIVAVHDELDIDYGVLRLKLGGGDNGHNGLKSMTKAM--GPDYHRVRFGIGRPPGRMQVADFVLKDFASAERKELDYLVDRAADAAECLVIEGLERAQGTYNS 203          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_GEOUR (Peptidyl-tRNA hydrolase OS=Geobacter uraniireducens (strain Rf4) GN=pth PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 80/184 (43.48%), Postives = 114/184 (61.96%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LIVGLGNPG +Y  TRHN GF ++D ++   GI+V+  NF    G+G      ++L KPQTFMN SG+SV   + ++K+ ++ ++VI DDLD+PF +++L   GGH GHNG+RS+     GS  F R+R+GIGRP    D VN+VL  FS +E   L       V+ + +L+ EG  K  +  N
Sbjct:    5 LIVGLGNPGPKYQWTRHNAGFMVLDRLSHLTGITVTRKNFSGLCGEGSWQGDRLILLKPQTFMNLSGRSVAEALRFHKLTVEDLIVIHDDLDIPFGRVKLKAGGGHAGHNGLRSLSQEL-GSGAFLRVRMGIGRPL-HGDVVNYVLSNFSPEEMIGLPRLLDGIVDLLEMLITEGLPKTMSLYN 186          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_LISMF5.112e-3543.45Peptidyl-tRNA hydrolase OS=Listeria monocytogenes ... [more]
PTH_LISMC5.112e-3543.45Peptidyl-tRNA hydrolase OS=Listeria monocytogenes ... [more]
PTH_KINRD5.112e-3539.57Peptidyl-tRNA hydrolase OS=Kineococcus radiotolera... [more]
PTH_ARTAT5.112e-3538.95Peptidyl-tRNA hydrolase OS=Arthrobacter aurescens ... [more]
PTH_STRPG6.677e-3542.86Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes ... [more]
PTH_STRPF6.677e-3542.86Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes ... [more]
PTH_STRP86.677e-3542.86Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes ... [more]
PTH_STRP66.677e-3542.86Peptidyl-tRNA hydrolase OS=Streptococcus pyogenes ... [more]
PTH_STRAW6.677e-3539.90Peptidyl-tRNA hydrolase OS=Streptomyces avermitili... [more]
PTH_GEOUR6.677e-3543.48Peptidyl-tRNA hydrolase OS=Geobacter uraniireducen... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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