FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1105 contig Ccv1_Contig1105:2..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ANADE (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pth PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.893e-40
Identity = 82/184 (44.57%), Postives = 122/184 (66.30%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            L+VGLGNPG++Y  TRHNVGF + D +A+  G S ++  F A   +  +G   V + KPQT+MN SG++VG+ + ++K+ L  ++V+ DDL+L   +++L   GGHGGHNG++S+  H  GS E+ R+R+G+GRPP +MD  ++VL  F+K E  ELD   +Q VEA R+ +  G  KA   VN
Sbjct:    3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFTAKKFAAELAEARLGPERVWILKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELEPFRVQLKVGGGHGGHNGVKSVNAHV-GSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELGAAKAMNQVN 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ANAD2 (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pth PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.893e-40
Identity = 82/184 (44.57%), Postives = 122/184 (66.30%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            L+VGLGNPG++Y  TRHNVGF + D +A+  G S S+  F A   +  +G   V + KPQT+MN SG++VG+ + ++K+ L  ++V+ DDL+L   +++L   GGHGGHNG++S+  H  GS E+ R+R+G+GRPP +MD  ++VL  F+K E  ELD   +Q VEA R+ +  G  +A   VN
Sbjct:    3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARLGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSVNAHV-GSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELGAARAMNQVN 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_THEPX (Peptidyl-tRNA hydrolase OS=Thermoanaerobacter sp. (strain X514) GN=pth PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.003e-40
Identity = 83/185 (44.86%), Postives = 124/185 (67.03%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            ++I GLGNPG++Y GTRHNVGF ++D +A+  G++V+ + FK+  G+G      ++L KPQTFMN+SG+++   V++YKIPL+ V+VI+DD DL   K+R+  KG  GGHNGM SII +   S EFPR+RIGIG+P  + D V+ VL  F + E++ +D    +  +AV  ++  G   A +  N
Sbjct:    2 YVIAGLGNPGREYEGTRHNVGFMVIDELAKKLGMNVTKLKFKSLVGEGNFKGEKIILLKPQTFMNSSGEALYDAVNFYKIPLENVIVIYDDKDLDLGKIRIRKKGSSGGHNGMNSII-YLLNSEEFPRVRIGIGKP--QKDLVSHVLGKFEESEKKLIDEAVIKAADAVIDIIENGIEHAMSKFN 183          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_EXISA (Peptidyl-tRNA hydrolase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=pth PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.536e-39
Identity = 83/166 (50.00%), Postives = 110/166 (66.27%), Query Frame = 1
Query:  151 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEA 648
            IVGLGNPGK++  TRHNVGF  +D +AE  GIS++   F A  G G I    V+L KP T+MN SG++V  I+ YYKI +  +LVI+DDLD+   K+R  PKG  GGHNG++S+I H  G+ EF RL++GIGRPP  +  V++VL  + K E  EL+ T    V A
Sbjct:    4 IVGLGNPGKKFEMTRHNVGFLAIDRLAEKHGISLNEAKFNALMGTGRINGERVVLVKPLTYMNLSGEAVRPILDYYKIEIDDLLVIYDDLDMVPGKLRFRPKGSAGGHNGIKSLIQHL-GTAEFKRLKLGIGRPPHPIKVVDWVLMNYRKDELPELNETLDNAVTA 168          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_GEOBB (Peptidyl-tRNA hydrolase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pth PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.006e-39
Identity = 86/184 (46.74%), Postives = 115/184 (62.50%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LIVGLGNPG +Y+ TRHN GF ++D +A   GI V+   F    G G   +  V L KPQTFMN SG+SV   + +YK+ L  ++VI DDLD+PF K++L   GGHGGHNG+RS+     GS  + R+R+GIGRP    D VNFVL  F+K+E   L       V+A+ +++ EG  KA +  N
Sbjct:    5 LIVGLGNPGPKYSWTRHNAGFMVLDRLASLSGIQVTRKAFSGLSGDGNWSSERVYLLKPQTFMNLSGRSVAEALRFYKLSLSDLIVIHDDLDIPFGKVKLKEGGGHGGHNGLRSLAQEL-GSSAYARIRVGIGRPV-HGDVVNFVLTNFAKEEMDSLLEVLDTSVDALEMMIKEGMPKAMSIFN 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRAAA (Peptidyl-tRNA hydrolase OS=Frankia alni (strain ACN14a) GN=pth PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.006e-39
Identity = 78/177 (44.07%), Postives = 115/177 (64.97%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEG 672
            PWL+VGLGNPG  Y G RHN GF +VD +AE  G  + S   +A   +  +     +LA+P +FMN SG  V ++ ++YKI   +V+V+ D+LD+PF  +RL   GG  GHNG+RSI     G+R++ R+R+GIGRPPG+MD  ++VLR F+  ER+EL    +   ++V +L+ +G
Sbjct:   10 PWLVVGLGNPGPGYAGNRHNAGFMVVDLLAERAGSRLKSHRSRADVAEVRLAGTRAILARPLSFMNLSGGPVSAVRTFYKIDPARVIVVHDELDIPFGSVRLKRGGGDNGHNGLRSISSAL-GTRDYLRVRVGIGRPPGRMDPADYVLRDFAAAERRELPLLLEHSADSVEMLITDG 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOD6 (Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.006e-39
Identity = 75/185 (40.54%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            +++VGLGNPGK+Y  TRHNVGF+++D +A+   ISV+ +  KA  G+G +G   V+L KPQT+MN SG+++  I  YYK+ L  ++V++DD+DL   K+R+  KG  G HNGM+SI     GS +FPR+R+G+ +P    D  +FVL  F K+E   ++   ++  +A+  ++ E  + +    N
Sbjct:    2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKPQTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL-GSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMSMNKYN 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_THEP3 (Peptidyl-tRNA hydrolase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=pth PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.421e-39
Identity = 82/185 (44.32%), Postives = 124/185 (67.03%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            ++I GLGNPG++Y GTRHNVGF ++D +A+  G++V+ + FK+  G+G      ++L KPQTF+N+SG+++   V++YKIPL+ V+VI+DD DL   K+R+  KG  GGHNGM SII +   S EFPR+RIGIG+P  + D V+ VL  F + E++ +D    +  +AV  ++  G   A +  N
Sbjct:    2 YVIAGLGNPGREYEGTRHNVGFMVIDELAKKLGMNVTKLKFKSLVGEGNFKGEKIILLKPQTFVNSSGEALYDAVNFYKIPLENVIVIYDDKDLDVGKIRIRKKGSSGGHNGMNSII-YLLNSEEFPRVRIGIGKP--QKDLVSHVLGKFEESEKKLIDEAVIKAADAVIDIIENGIEHAMSKFN 183          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_GEOSM (Peptidyl-tRNA hydrolase OS=Geobacter sp. (strain M21) GN=pth PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.468e-39
Identity = 86/184 (46.74%), Postives = 114/184 (61.96%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LIVGLGNPG +Y+ TRHN GF ++D +A   GI V+   F    G G      V L KPQTFMN SG+SV   + +YK+ L  ++VI DDLD+PF K++L   GGHGGHNG+RS+     GS  + R+R+GIGRP    D VNFVL  F+K+E   L       V+A+ +++ EG  KA +  N
Sbjct:    5 LIVGLGNPGPKYSWTRHNAGFMVLDRLASISGIQVTRKAFSGLSGDGNWAAERVYLLKPQTFMNLSGRSVAEALRFYKLSLSDLIVIHDDLDIPFGKVKLKEGGGHGGHNGLRSLAQEL-GSSAYARIRVGIGRPV-HGDVVNFVLANFAKEEMDSLLEVLDTSVDALEMMIKEGMPKAMSIFN 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BDEBA (Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovorus GN=pth PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.621e-39
Identity = 82/187 (43.85%), Postives = 121/187 (64.71%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSV-NFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            WLIVGLGNPG +Y  TRHN+GF  VD + E  G       FKA   +  I + PV+  KPQT+MN SG+SV  ++ +YKIPL++++VI D++D PF++M++    GHGGHNG++S I    GS ++ RLR+G+GRP      V ++VL  F+K+E  ++     +  +AV  ++L+G  KA+T  NT
Sbjct:    2 WLIVGLGNPGGEYKLTRHNIGFMAVDFLMEGLGNPPIKNQFKAEIAQAKIKDHPVIFCKPQTYMNLSGESVQPLMGFYKIPLERLIVIHDEIDQPFAQMKIQKNRGHGGHNGIKS-ISGLMGSMDYTRLRLGVGRPANPNIPVPDYVLGKFTKEEFAQMPDFLNKAGDAVESIILDGIQKASTKFNT 187          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_ANADE6.893e-4044.57Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalo... [more]
PTH_ANAD26.893e-4044.57Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalo... [more]
PTH_THEPX9.003e-4044.86Peptidyl-tRNA hydrolase OS=Thermoanaerobacter sp. ... [more]
PTH_EXISA1.536e-3950.00Peptidyl-tRNA hydrolase OS=Exiguobacterium sp. (st... [more]
PTH_GEOBB2.006e-3946.74Peptidyl-tRNA hydrolase OS=Geobacter bemidjiensis ... [more]
PTH_FRAAA2.006e-3944.07Peptidyl-tRNA hydrolase OS=Frankia alni (strain AC... [more]
PTH_CLOD62.006e-3940.54Peptidyl-tRNA hydrolase OS=Clostridium difficile (... [more]
PTH_THEP33.421e-3944.32Peptidyl-tRNA hydrolase OS=Thermoanaerobacter pseu... [more]
PTH_GEOSM4.468e-3946.74Peptidyl-tRNA hydrolase OS=Geobacter sp. (strain M... [more]
PTH_BDEBA7.621e-3943.85Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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