FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1105 contig Ccv1_Contig1105:2..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACCN (Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pth PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.954e-39
Identity = 78/176 (44.32%), Postives = 115/176 (65.34%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGF 675
            LIVGLGNPG++Y  TRHN+GF  +D +A+   IS++   FK  FG GF+    V+L KP T+MN SG+S+  ++ YYKI L+  ++++DDLDLP  K+RL  KG  GGHNG++S I H  G++EF R+R+GI RP   M  V++VL  F+ +E  +++   ++   A    L + F
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGMFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDLEDFIIMYDDLDLPVGKLRLRMKGSAGGHNGVKSTIAHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTAEEMVDVNHAIEKAANACEEWLNKSF 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_NOSP7 (Peptidyl-tRNA hydrolase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pth PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.300e-38
Identity = 86/194 (44.33%), Postives = 122/194 (62.89%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFI-GNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMD-----SVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            P LIVGLGNP  +Y+ TRHN+GF  V+A++ +  IS++ +  F+  +G+G   G   + L KP T+MN SGQS+ ++ S+YK+P + VL+I+DD+DLP  K RL   G  GGHNGM+S I H   ++ FPRLRIGIG+P G  D     +V+ VL  FS  E Q++    Q  VE + + L +G  KA    N+
Sbjct:   13 PQLIVGLGNPESKYDQTRHNIGFAAVEALSRSWRISLAENRKFQGEYGEGMAPGGGKIRLLKPLTYMNRSGQSIQAVTSWYKLPPESVLIIYDDMDLPLGKTRLRLSGSAGGHNGMKSAIAHL-STQNFPRLRIGIGKPKGAADNDDSNTVSHVLGRFSSAENQQMSLVLQFVVECIELSLKQGVEKAMNVCNS 205          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOBK (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra / Type B1) GN=pth PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.300e-38
Identity = 80/188 (42.55%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +L+VGLGN GK+Y  TRHN+GF++VD IAE   I ++   FK  +G+G IGN  ++L KP T+MN SG+SV    ++YKI  + ++VI+DD+ +   K+R+  KG  GGHNG+++II H   S  FPR+R+GIG+P   +  VN+VL  FSK +R+ +D       +A   ++ +G  +A    N  K
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL-NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIDKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOBH (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.300e-38
Identity = 80/188 (42.55%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +L+VGLGN GK+Y  TRHN+GF++VD IAE   I ++   FK  +G+G IGN  ++L KP T+MN SG+SV    ++YKI  + ++VI+DD+ +   K+R+  KG  GGHNG+++II H   S  FPR+R+GIG+P   +  VN+VL  FSK ER+ ++       +A   ++ +G  +A    N  K
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHL-NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOB1 (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.300e-38
Identity = 80/188 (42.55%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +L+VGLGN GK+Y  TRHN+GF++VD IAE   I ++   FK  +G+G IGN  ++L KP T+MN SG+SV    ++YKI  + ++VI+DD+ +   K+R+  KG  GGHNG+++II H   S  FPR+R+GIG+P   +  VN+VL  FSK ER+ ++       +A   ++ +G  +A    N  K
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHL-NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOBJ (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=pth PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.698e-38
Identity = 80/188 (42.55%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +L+VGLGN GK+Y  TRHN+GF++VD IAE   I ++   FK  +G+G IGN  ++L KP T+MN SG+SV    ++YKI  + ++VI+DD+ +   K+R+  KG  GGHNG+++II H   S  FPR+R+GIG+P   +  VN+VL  FSK ER+ ++       +A   ++ +G  +A    N  K
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL-NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACHK (Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian GN=pth PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.698e-38
Identity = 75/167 (44.91%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEA 648
            LIVGLGNPG++Y  TRHN+GF  +D +A+   IS++   FK  FG GF+    V+L KP T+MN SG+S+  ++ YYKI ++  +V++DDLD+P  K+RL  KG  GGHNG++S I H  G++EF R+R+GI RP   M  V++VL  F+ +E  +++ + ++  +A
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADA 168          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACCZ (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ZK / E33L) GN=pth PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.698e-38
Identity = 75/167 (44.91%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEA 648
            LIVGLGNPG++Y  TRHN+GF  +D +A+   IS++   FK  FG GF+    V+L KP T+MN SG+S+  ++ YYKI ++  +V++DDLD+P  K+RL  KG  GGHNG++S I H  G++EF R+R+GI RP   M  V++VL  F+ +E  +++ + ++  +A
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADA 168          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACCQ (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain Q1) GN=pth PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.698e-38
Identity = 75/167 (44.91%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEA 648
            LIVGLGNPG++Y  TRHN+GF  +D +A+   IS++   FK  FG GF+    V+L KP T+MN SG+S+  ++ YYKI ++  +V++DDLD+P  K+RL  KG  GGHNG++S I H  G++EF R+R+GI RP   M  V++VL  F+ +E  +++ + ++  +A
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADA 168          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACAN (Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.698e-38
Identity = 75/167 (44.91%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEA 648
            LIVGLGNPG++Y  TRHN+GF  +D +A+   IS++   FK  FG GF+    V+L KP T+MN SG+S+  ++ YYKI ++  +V++DDLD+P  K+RL  KG  GGHNG++S I H  G++EF R+R+GI RP   M  V++VL  F+ +E  +++ + ++  +A
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADA 168          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_BACCN9.954e-3944.32Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. ... [more]
PTH_NOSP71.300e-3844.33Peptidyl-tRNA hydrolase OS=Nostoc punctiforme (str... [more]
PTH_CLOBK1.300e-3842.55Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOBH1.300e-3842.55Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOB11.300e-3842.55Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOBJ1.698e-3842.55Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_BACHK1.698e-3844.91Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis ... [more]
PTH_BACCZ1.698e-3844.91Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain... [more]
PTH_BACCQ1.698e-3844.91Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain... [more]
PTH_BACAN1.698e-3844.91Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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