FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PELPD (Peptidyl-tRNA hydrolase OS=Pelobacter propionicus (strain DSM 2379) GN=pth PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.217e-38
Identity = 84/191 (43.98%), Postives = 117/191 (61.26%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKPMEQ 720
            +I GLGNPG  Y  TRHN GF  +D +A  E +S++  +F    G+    N   +L KPQTFMN SG+SV   + +YK+PL Q +V+ DDLDLPF  +RL   GGHGGHNG+RSI++   G  +F RLR+GIGRP    D+VN+VL     ++ + L      G+E + +LL +G  KA +  N    +E+
Sbjct:    5 IIAGLGNPGSHYQWTRHNAGFLFLDRLAHLENVSITRKSFSGLAGEWSRANCRHILLKPQTFMNLSGRSVMQALQFYKLPLSQAIVVHDDLDLPFGTVRLKQGGGHGGHNGLRSIMEQL-GKGDFIRLRVGIGRPL-HGDTVNYVLGSMPPEQMELLPRILDGGLEMLEMLLDQGLPKAMSLFNNRNFLEK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOBB (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=pth PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.217e-38
Identity = 77/188 (40.96%), Postives = 122/188 (64.89%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +LIVGLGNPG +Y+ TRHN+GFE++D I+    I ++   F+  +G+GFI N  V+L KP T+MN SG SV  + ++YKI  + ++VI+DD+ L   ++R+  KG  GGHNG++SII +   +  FPR+++G+G+P   +D VN+VL  FSK+E++ L  + +    +V  ++ +  N A    N  K
Sbjct:    2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFRGVYGEGFIANNKVILLKPTTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL-STDVFPRIKVGVGQP--NIDLVNYVLGKFSKEEKEVLKESIEVATNSVEEIIKQDVNSAMNKFNGFK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOAB (Peptidyl-tRNA hydrolase OS=Clostridium acetobutylicum GN=pth PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.217e-38
Identity = 80/188 (42.55%), Postives = 118/188 (62.77%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +LIVGLGNPG +Y  TRHN+GF+ ++ IA    IS+    FK  +GKG I    V+L KP T+MN SG+SV    +YYKI  + ++VI+DD+ L   K+R+  KG  GGHNG+++I+ H   S EFPR+++G+G P   +  VN+VL  FS+ ER++++       EAV  ++++G   A    N  K
Sbjct:    2 FLIVGLGNPGLKYEHTRHNMGFDAIENIAAKHNISIDKKGFKGLYGKGIIDGEKVILLKPYTYMNLSGESVVEAANYYKINKENIVVIYDDISLDVGKIRIRTKGSAGGHNGIKNIVLHL-SSEEFPRVKVGVGEPTENL--VNYVLGKFSQDERKKIEEVLNIVTEAVECMVVDGVQNAMNKFNGLK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACCR (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=pth PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.217e-38
Identity = 75/167 (44.91%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEA 648
            LIVGLGNPG++Y  TRHN+GF  +D +A+   IS++   FK  FG GF+    V+L KP T+MN SG+S+  ++ YYKI ++  +V++DDLD+P  K+RL  KG  GGHNG++S I H  G++EF R+R+GI RP   M  V++VL  F+ +E  +++ + ++  +A
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVMYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADA 168          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ALKOO (Peptidyl-tRNA hydrolase OS=Alkaliphilus oremlandii (strain OhILAs) GN=pth PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.217e-38
Identity = 80/175 (45.71%), Postives = 117/175 (66.86%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEG 672
            +IVGLGNPGK+Y+ TRHN+GFE +D +A+   I V  +  KA  G+G IG   V+L KPQTFMN SGQS+  IV +YK+  K ++V++DD+D+P   +R+  KG  G HNGM+SII +   + +FPR+RIG+G+P    D  ++VL  F K+E   +  T ++  +AV  L+ +G
Sbjct:    3 IIVGLGNPGKKYDATRHNIGFEAIDMLAKRNNIEVKKLKHKALCGEGTIGGNKVLLVKPQTFMNLSGQSLLDIVQFYKVDPKNIVVLYDDIDIPVGTLRIREKGSSGTHNGMKSII-YLLQTDQFPRIRIGVGKPQFG-DLADYVLGRFPKEEIPTMLETLERASQAVETLVKDG 175          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACSU (Peptidyl-tRNA hydrolase OS=Bacillus subtilis GN=spoVC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.896e-38
Identity = 78/176 (44.32%), Postives = 112/176 (63.64%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGF 675
            +I GLGNPGK Y  TRHNVGF ++D +A+   I ++   F   +G GF+    V+L KP T+MN SG+ +  ++ YY +  + + VI+DDLDLP  K+RL  KG  GGHNG++S+I H  G+ EF R+RIGIGRP   M  V++VL  F+K+E  E++    + V+A    L + F
Sbjct:    3 VIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL-GTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPF 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOBM (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=pth PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.782e-38
Identity = 78/188 (41.49%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +L+VGLGN GK+Y  TRHN+GF++VD +AE   I ++   FK  +G+G IGN  ++L KP T+MN SG+SV    ++YKI  + ++VI+DD+ +   K+R+  KG  GGHNG+++II H   S  FPR+R+GIG+P   +  VN+VL  FSK +R+ ++       +A   ++ +G  +A    N  K
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIVAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL-NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREVIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOBL (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=pth PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.782e-38
Identity = 79/188 (42.02%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +L+VGLGN GK+Y  TRHN+GF++VD IAE   I ++   FK  +G+G IGN  ++L KP T+MN SG+SV    ++YKI  + ++VI+DD+ +   K+R+  KG  GGHNG+++II H   S  FPR+R+GIG+P   +  VN+VL  FSK +R+ ++       +A   ++ +G  +A    N  K
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL-NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOB6 (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=pth PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.782e-38
Identity = 79/188 (42.02%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +L+VGLGN GK+Y  TRHN+GF++VD IAE   I ++   FK  +G+G IGN  ++L KP T+MN SG+SV    ++YKI  + ++VI+DD+ +   K+R+  KG  GGHNG+++II H   S  FPR+R+GIG+P   +  VN+VL  FSK +R+ ++       +A   ++ +G  +A    N  K
Sbjct:    2 YLVVGLGNIGKEYKQTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL-NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_HERA2 (Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pth PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.940e-38
Identity = 85/190 (44.74%), Postives = 116/190 (61.05%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI-PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKP 711
            +LIVGLGNPG++Y   RHNVGF+ V   A    +S       A   +G +    V LA+PQTFMN SG+SV  +V++YKI P  ++LV++DDLDLPF  ++L  +G  GG  GM SII    G+++F RLR GIGRPP   + +NFVL  ++  ER+ L   + + VEA  + L +G  KA   VN   P
Sbjct:    2 FLIVGLGNPGEKYLNNRHNVGFQCVAEFARRHHLSFDGKRSDARIAEGLVNGQRVALARPQTFMNDSGKSVVGLVNWYKIDPASELLVVYDDLDLPFGTIKLRNQGSSGGQRGMNSII-QLLGTQKFARLRFGIGRPPEGWEVINFVLGNWNAAERETLPKLYDRAVEACELCLSDGVTKAMNAVNGEAP 190          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_PELPD2.217e-3843.98Peptidyl-tRNA hydrolase OS=Pelobacter propionicus ... [more]
PTH_CLOBB2.217e-3840.96Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOAB2.217e-3842.55Peptidyl-tRNA hydrolase OS=Clostridium acetobutyli... [more]
PTH_BACCR2.217e-3844.91Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain... [more]
PTH_ALKOO2.217e-3845.71Peptidyl-tRNA hydrolase OS=Alkaliphilus oremlandii... [more]
PTH_BACSU2.896e-3844.32Peptidyl-tRNA hydrolase OS=Bacillus subtilis GN=sp... [more]
PTH_CLOBM3.782e-3841.49Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOBL3.782e-3842.02Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOB63.782e-3842.02Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_HERA24.940e-3844.74Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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