FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_VIBC3 (Peptidyl-tRNA hydrolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=pth PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.634e-28
Identity = 65/188 (34.57%), Postives = 107/188 (56.91%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSV-NFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            L+VGL NPG +Y  TRHN G  +V+ +A    +++ +   F    G+  I +  + +  P TFMN SG+++ ++ ++Y+I  ++++V  D+LDLP    +    GGHGGHNG++  I     ++EF RLR+GIG P  K     +VL     +E++ LD    + V  + IL+ +G  KA   ++T K
Sbjct:    7 LLVGLANPGPEYAKTRHNAGAWVVEELARIHNVTLKNEPKFFGLTGRLLINSQELRVLIPTTFMNLSGKAIAALANFYQIKPEEIMVAHDELDLPPGVAKFKQGGGHGGHNGLKDTISKLGNNKEFYRLRLGIGHPGHKDKVAGYVLGKAPAKEQECLDAAVDESVRCLEILMKDGLTKAQNRLHTFK 194          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSEPG (Peptidyl-tRNA hydrolase OS=Pseudomonas putida (strain GB-1) GN=pth PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.634e-28
Identity = 76/191 (39.79%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGK----GFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGLGNPG +Y  TRHN G   V+ IA A+ +S+++   K +FG        GN  V L  P T+MN SGQSV ++ ++++I  + +LV  D+LDLP    +L   GGHGGHNG+R II       +F RLR+GIG P       NFVL    + E+++LD +    +  +  +L   F KA   +++ K
Sbjct:    6 LIVGLGNPGPEYEQTRHNAGALFVERIASAQRVSLTAD--KKYFGLTAKFSHQGN-DVRLLIPTTYMNRSGQSVAALANFFRIKPEAILVAHDELDLPPGVAKLKRGGGHGGHNGLRDIIAQLGNQNDFHRLRLGIGHPGDAKLVSNFVLGRAPRAEQEKLDASIDFALGVLPDVLAGDFAKAMRELHSQK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_NEIMA (Peptidyl-tRNA hydrolase OS=Neisseria meningitidis serogroup A GN=pth PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.634e-28
Identity = 69/188 (36.70%), Postives = 111/188 (59.04%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVP---VMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            ++VGLGNPGK+Y  TRHN GF  +D +A     S      K  FG+     +P   V L KP TFMN SGQ+V ++  +YKI  +++LV+ D+LD+P  +++    GG+GGHNG++ I     G+ ++ RLR+GIG P  +   V +VL   S + R+++D    + ++A+  +L     +A  F+++
Sbjct:    7 MVVGLGNPGKEYEQTRHNAGFWFLDELAWKWKASFKEE--KKFFGEVARATLPDGDVWLLKPTTFMNRSGQAVAALAQFYKIKPEEILVVHDELDIPCGRIKFKLGGGNGGHNGLKDIQAKL-GTADYYRLRLGIGHPGDRNLVVGYVLNKPSTEHRRQIDDAVAKSLQAIPDILAGKCEEATRFLHS 191          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALCH (Peptidyl-tRNA hydrolase OS=Salmonella choleraesuis GN=pth PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 72/188 (38.30%), Postives = 100/188 (53.19%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++VS+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGTEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMVSFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PROM5 (Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus (strain MIT 9515) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 67/176 (38.07%), Postives = 107/176 (60.80%), Query Frame = 1
Query:  151 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPP-----GKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRIL 660
            I+GLGNPGKQY  +RHN+GF +++  ++      +  N  K+ + +  I +    L  P T+MN SG +V +IV +YKI L +V +I DD+DLP  K+R   KG  GGHNG++ II+  + +  F R++IGIG PP      ++++++ VL   S QE   L+  +Q+ +E++  L
Sbjct:    8 IIGLGNPGKQYIKSRHNIGFLLLETFSKKYDAQFTLKNKLKSRYTEFKINDSIYKLFMPHTYMNNSGDAVKAIVDWYKISLDKVFIIVDDIDLPLGKIRFRKKGSSGGHNGLKDIINKLQ-TENFNRIKIGIGSPPINETKKQLNTISHVLGNISSQENSTLEKVYQKVIESLEEL 182          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_NEIG2 (Peptidyl-tRNA hydrolase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 66/186 (35.48%), Postives = 110/186 (59.14%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            ++VGLGNPGK+Y  TRHN GF  +D +A     S      F     +  + +  V L KP TFMN SGQ+V ++  +YKI  +++LV+ D+LD+P  +++    GG+GGHNG++ I     G+ ++ RLR+GIG P  +   V +VL   S + R+++D    + ++AV  ++   + +A  F+++
Sbjct:    7 MVVGLGNPGKEYEQTRHNAGFWFLDELAWKWKASFKEEKKFFGEVARAALPDGDVWLLKPATFMNRSGQAVAALAQFYKIKPEEILVVHDELDIPCGRIKFKLGGGNGGHNGLKDIQAKL-GTADYYRLRLGIGHPGDRNLVVGYVLNKPSAEHRRQIDDAVAKSLQAVPDIISGKWEEATRFLHS 191          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_NEIG1 (Peptidyl-tRNA hydrolase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 66/186 (35.48%), Postives = 110/186 (59.14%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            ++VGLGNPGK+Y  TRHN GF  +D +A     S      F     +  + +  V L KP TFMN SGQ+V ++  +YKI  +++LV+ D+LD+P  +++    GG+GGHNG++ I     G+ ++ RLR+GIG P  +   V +VL   S + R+++D    + ++AV  ++   + +A  F+++
Sbjct:    7 MVVGLGNPGKEYEQTRHNAGFWFLDELAWKWKASFKEEKKFFGEVARAALPDGDVWLLKPATFMNRSGQAVAALAQFYKIKPEEILVVHDELDIPCGRIKFKLGGGNGGHNGLKDIQAKL-GTADYYRLRLGIGHPGDRNLVVGYVLNKPSAEHRRQIDDAVAKSLQAVPDIISGKWEEATRFLHS 191          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCA5 (Peptidyl-tRNA hydrolase OS=Mycoplasma arthritidis (strain 158L3-1) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 68/158 (43.04%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELD 621
            LIVGLGNPG +Y  TRHN+GF  VD I E   IS++   F   F +    N   +LAKP T+MN SG  V +++ YY I ++ ++V++DD+DL   K  +  KG  GGHNG++ II+  K +    RL++GIGR     +++NFVL  FS  + Q +D
Sbjct:    3 LIVGLGNPGTEYEKTRHNIGFMAVDKICEKLNISLNEKKFNGIFYR----NKDFILAKPLTYMNKSGDFVQALMQYYDISVEDLIVVYDDMDLLIGKAVIRQKGSSGGHNGIKDIIEKLK-TENIKRLKVGIGRGD---NAINFVLGKFSIADYQIID 152          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_METRJ (Peptidyl-tRNA hydrolase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 68/153 (44.44%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQE 606
            LIVGLGNPG +Y G RHN+GF  VDAIA     S     F+    +  +G    +L KP TFMN SG++V     +YKIPL  V+V+ D+LDL  +K+R+   GG+ GHNG+RSI    +   ++ R+R+GIG P  K     +VL  F K E
Sbjct:    3 LIVGLGNPGARYAGNRHNIGFLAVDAIARQHRASPFRHRFQGEAAEVVLGTERAILLKPSTFMNESGRAVSEAQRFYKIPLADVIVLHDELDLAPAKLRVKRGGGNAGHNGLRSIT--AQCGNDYRRVRLGIGHPGDKALVHAYVLNDFGKAE 153          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRATW (Peptidyl-tRNA hydrolase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            +IVGLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L  P T+MN SG +V  + ++YKI   ++LV+ D+LD+   ++RL   GGHGGHNG+RSI  H  G+ ++ RLRIGIG P  K    N+VL   S  +++++D     G+
Sbjct:    6 MIVGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 170          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_VIBC34.634e-2834.57Peptidyl-tRNA hydrolase OS=Vibrio cholerae serotyp... [more]
PTH_PSEPG4.634e-2839.79Peptidyl-tRNA hydrolase OS=Pseudomonas putida (str... [more]
PTH_NEIMA4.634e-2836.70Peptidyl-tRNA hydrolase OS=Neisseria meningitidis ... [more]
PTH_SALCH6.053e-2838.30Peptidyl-tRNA hydrolase OS=Salmonella choleraesuis... [more]
PTH_PROM56.053e-2838.07Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus... [more]
PTH_NEIG26.053e-2835.48Peptidyl-tRNA hydrolase OS=Neisseria gonorrhoeae (... [more]
PTH_NEIG16.053e-2835.48Peptidyl-tRNA hydrolase OS=Neisseria gonorrhoeae (... [more]
PTH_MYCA56.053e-2843.04Peptidyl-tRNA hydrolase OS=Mycoplasma arthritidis ... [more]
PTH_METRJ6.053e-2844.44Peptidyl-tRNA hydrolase OS=Methylobacterium radiot... [more]
PTH_FRATW6.053e-2841.57Peptidyl-tRNA hydrolase OS=Francisella tularensis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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