FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRATN (Peptidyl-tRNA hydrolase OS=Francisella tularensis subsp. novicida (strain U112) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            +IVGLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L  P T+MN SG +V  + ++YKI   ++LV+ D+LD+   ++RL   GGHGGHNG+RSI  H  G+ ++ RLRIGIG P  K    N+VL   S  +++++D     G+
Sbjct:    6 MIVGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 170          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRATM (Peptidyl-tRNA hydrolase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            +IVGLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L  P T+MN SG +V  + ++YKI   ++LV+ D+LD+   ++RL   GGHGGHNG+RSI  H  G+ ++ RLRIGIG P  K    N+VL   S  +++++D     G+
Sbjct:    6 MIVGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 170          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_DEIDV (Peptidyl-tRNA hydrolase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 75/187 (40.11%), Postives = 105/187 (56.15%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFK--AHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            L+VGLGNPG QY  TRHNVG+ +V+ +A   G +         A    G    V V+L KPQTFMNASG++V   +S++K+    +LV+ DDLD PF  M++   G HGG NG+R II    G+  F RL++GI RPP   D  ++VL  +  +E+  L    + G +AV      G  +A    N+
Sbjct:    3 LVVGLGNPGTQYAQTRHNVGWLVVNEVARRWGATWRKEKDAEVAEIRLGPAPGVKVLLVKPQTFMNASGKAVVPRLSFFKLDPGALLVVQDDLDSPFGLMKVRLGGRHGGQNGVRDII-RLLGTEAFARLKLGISRPPAGRDPADWVLSRWRDEEQSTLGDLVRLGADAVERWATAGLAEAQQAFNS 188          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BURP6 (Peptidyl-tRNA hydrolase OS=Burkholderia pseudomallei (strain 668) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRP----------PGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            LIVGLGNPG +Y  TRHN GF +VD +A   G ++     F   + K  +    V L +PQT+MN SGQ+V ++  ++KI   ++LV  D+LDLP    +L   GG GGHNG++ I  H   S+++ RLRIGIG P            K D  NFVL+P  K E+  +D   ++ +
Sbjct:    4 LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLFGEEVHLLEPQTYMNRSGQAVVALAHFFKILPTEILVAHDELDLPPGAAKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDLIPESARAGAKPDVANFVLKPPRKDEQDLIDAAIERAL 178          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BURP1 (Peptidyl-tRNA hydrolase OS=Burkholderia pseudomallei (strain 1710b) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRP----------PGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            LIVGLGNPG +Y  TRHN GF +VD +A   G ++     F   + K  +    V L +PQT+MN SGQ+V ++  ++KI   ++LV  D+LDLP    +L   GG GGHNG++ I  H   S+++ RLRIGIG P            K D  NFVL+P  K E+  +D   ++ +
Sbjct:    4 LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLFGEEVHLLEPQTYMNRSGQAVVALAHFFKILPTEILVAHDELDLPPGAAKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDLIPESARAGAKPDVANFVLKPPRKDEQDLIDAAIERAL 178          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BURP0 (Peptidyl-tRNA hydrolase OS=Burkholderia pseudomallei (strain 1106a) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRP----------PGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            LIVGLGNPG +Y  TRHN GF +VD +A   G ++     F   + K  +    V L +PQT+MN SGQ+V ++  ++KI   ++LV  D+LDLP    +L   GG GGHNG++ I  H   S+++ RLRIGIG P            K D  NFVL+P  K E+  +D   ++ +
Sbjct:    4 LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLFGEEVHLLEPQTYMNRSGQAVVALAHFFKILPTEILVAHDELDLPPGAAKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDLIPESARAGAKPDVANFVLKPPRKDEQDLIDAAIERAL 178          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BURM9 (Peptidyl-tRNA hydrolase OS=Burkholderia mallei (strain NCTC 10229) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRP----------PGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            LIVGLGNPG +Y  TRHN GF +VD +A   G ++     F   + K  +    V L +PQT+MN SGQ+V ++  ++KI   ++LV  D+LDLP    +L   GG GGHNG++ I  H   S+++ RLRIGIG P            K D  NFVL+P  K E+  +D   ++ +
Sbjct:    4 LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLFGEEVHLLEPQTYMNRSGQAVVALAHFFKILPTEILVAHDELDLPPGAAKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDLIPESARAGAKPDVANFVLKPPRKDEQDLIDAAIERAL 178          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BURM7 (Peptidyl-tRNA hydrolase OS=Burkholderia mallei (strain NCTC 10247) GN=pth PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.053e-28
Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRP----------PGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            LIVGLGNPG +Y  TRHN GF +VD +A   G ++     F   + K  +    V L +PQT+MN SGQ+V ++  ++KI   ++LV  D+LDLP    +L   GG GGHNG++ I  H   S+++ RLRIGIG P            K D  NFVL+P  K E+  +D   ++ +
Sbjct:    4 LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLFGEEVHLLEPQTYMNRSGQAVVALAHFFKILPTEILVAHDELDLPPGAAKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDLIPESARAGAKPDVANFVLKPPRKDEQDLIDAAIERAL 178          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SHIDS (Peptidyl-tRNA hydrolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 70/188 (37.23%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +G   V L  P TFMN SG++V ++ S+++I   ++LV+ D+LDLP    +    GGHGGHNG++ II     +  F RLRIGIG P  K   V FVL      E++ +D    + V    +   +G  KA   ++  K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVVHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAVRCTEMWFTDGLTKATNRLHAFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_RHOPT (Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palustris (strain TIE-1) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 64/154 (41.56%), Postives = 90/154 (58.44%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQER 609
            L VGLGNPG +Y G RHN+GF ++D IA   G S     F+     G +    + L KP T+MN SG++V    S+YKI   ++ V  D+++LP +K+R+   GG  GHNG+RSI  H     ++ R+R+G+G P  K    N VL  F+K ER
Sbjct:    3 LFVGLGNPGAKYQGNRHNIGFMVIDEIARRHGFSPWRRRFQGETADGVLDGERITLLKPLTYMNESGRAVQDAASFYKIGQNEIAVFHDEIELPPAKVRVKVGGGIAGHNGLRSISAHI--GNDYLRVRLGVGHPGAKELVHNHVLGDFAKSER 154          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_FRATN6.053e-2841.57Peptidyl-tRNA hydrolase OS=Francisella tularensis ... [more]
PTH_FRATM6.053e-2841.57Peptidyl-tRNA hydrolase OS=Francisella tularensis ... [more]
PTH_DEIDV6.053e-2840.11Peptidyl-tRNA hydrolase OS=Deinococcus deserti (st... [more]
PTH_BURP66.053e-2840.34Peptidyl-tRNA hydrolase OS=Burkholderia pseudomall... [more]
PTH_BURP16.053e-2840.34Peptidyl-tRNA hydrolase OS=Burkholderia pseudomall... [more]
PTH_BURP06.053e-2840.34Peptidyl-tRNA hydrolase OS=Burkholderia pseudomall... [more]
PTH_BURM96.053e-2840.34Peptidyl-tRNA hydrolase OS=Burkholderia mallei (st... [more]
PTH_BURM76.053e-2840.34Peptidyl-tRNA hydrolase OS=Burkholderia mallei (st... [more]
PTH_SHIDS7.905e-2837.23Peptidyl-tRNA hydrolase OS=Shigella dysenteriae se... [more]
PTH_RHOPT7.905e-2841.56Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palust... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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