FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_RHOPA (Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palustris GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 64/154 (41.56%), Postives = 90/154 (58.44%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQER 609
            L VGLGNPG +Y G RHN+GF ++D IA   G S     F+     G +    + L KP T+MN SG++V    S+YKI   ++ V  D+++LP +K+R+   GG  GHNG+RSI  H     ++ R+R+G+G P  K    N VL  F+K ER
Sbjct:    3 LFVGLGNPGAKYQGNRHNIGFMVIDEIARRHGFSPWRRRFQGETADGVLDGERITLLKPLTYMNESGRAVQDAASFYKIGQNEIAVFHDEIELPPAKVRVKVGGGIAGHNGLRSISAHI--GNDYLRVRLGVGHPGAKELVHNHVLGDFAKSER 154          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSESM (Peptidyl-tRNA hydrolase OS=Pseudomonas syringae pv. tomato GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 71/188 (37.77%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGLGNPG +Y  TRHN G   V+ IA A+ ++ V    F    G+       V L  P T+MN SGQ+V ++  +Y+IP++ +LV  D+LDLP    +L   GGHGGHNG+R II        F RLR+GIG P        FVL    + E+++LD +    +  +  +    +N+A   +++ K
Sbjct:    6 LIVGLGNPGAEYEQTRHNAGAFFVERIAAAQRVNLVPERKFFGLTGRFTHQGQDVRLLIPTTYMNRSGQAVAALAGFYRIPIESILVAHDELDLPPGVAKLKVGGGHGGHNGLRDIIAQLGNQNTFHRLRLGIGHPGDASKVSGFVLGRAPRAEQEKLDASIDFALGVLPDIFAGEWNRAMKNLHSQK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSEPK (Peptidyl-tRNA hydrolase OS=Pseudomonas putida (strain KT2440) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 75/191 (39.27%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGK----GFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGLGNPG +Y  TRHN G   V+ +A A+ +S+++   K +FG        GN  V L  P T+MN SGQSV ++ ++++I  + +LV  D+LDLP    +L   GGHGGHNG+R II       +F RLR+GIG P       NFVL    + E+++LD +    +  +  +L   F KA   +++ K
Sbjct:    6 LIVGLGNPGPEYEQTRHNAGALFVERLASAQRVSLTAD--KKYFGLTAKFSHQGN-DVRLLIPTTYMNRSGQSVAALANFFRIKPEAILVAHDELDLPPGVAKLKRGGGHGGHNGLRDIIAQLGNQNDFHRLRLGIGHPGDAKLVSNFVLGRAPRAEQEKLDASIDFALGVLPDVLAGDFAKAMRELHSQK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSEP1 (Peptidyl-tRNA hydrolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 75/191 (39.27%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGK----GFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGLGNPG +Y  TRHN G   V+ +A A+ +S+++   K +FG        GN  V L  P T+MN SGQSV ++ ++++I  + +LV  D+LDLP    +L   GGHGGHNG+R II       +F RLR+GIG P       NFVL    + E+++LD +    +  +  +L   F KA   +++ K
Sbjct:    6 LIVGLGNPGPEYEQTRHNAGALFVERLASAQRVSLTAD--KKYFGLTAKFSHQGN-DVRLLIPTTYMNRSGQSVAALANFFRIKPEAILVAHDELDLPPGVAKLKRGGGHGGHNGLRDIIAQLGNQNDFHRLRLGIGHPGDAKLVSNFVLGRAPRAEQEKLDASIDFALGVLPDVLAGDFAKAMRELHSQK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PROMS (Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus (strain AS9601) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 69/173 (39.88%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  151 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPP---GK--MDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            ++GLGNPGK+Y  +RHN+GF ++++ ++    + +     K+   +  I N    L  P TFMN SG +V +IV +YKI L Q+L+I DD DLP  K+R   KG  GGHNG++SII+  + ++ F R+RIGIG PP   GK   ++++ VL   S  E+  LD  + + +E++
Sbjct:    6 LIGLGNPGKKYFNSRHNIGFLLLESFSKKYNSNFLLKDKLKSSCSEFQINNSTFKLFLPNTFMNNSGDAVRAIVDWYKINLDQILIIVDDKDLPLGKIRFRRKGSSGGHNGLKSIIEQLQ-TQNFKRIRIGIGSPPITNGKNHFNTISHVLGNISLDEKSILDKVYSRVIESL 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_METPB (Peptidyl-tRNA hydrolase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQE 606
            LIVGLGNPG++Y   RHN+GF  VD IA     +     F+    +  +G+   +L KPQTFMN SG+SVG    ++KIPL  V+V+ D+LDL  +K+R+   GG+ GHNG+RSI        ++ R+R+GIG P  K     +VL  F+K E
Sbjct:    3 LIVGLGNPGQRYARNRHNIGFMAVDEIARVHRAAPFRRRFQGEAAEVMLGSERAILLKPQTFMNESGRSVGEAQRFFKIPLSDVIVLHDELDLAPAKLRVKLGGGNAGHNGLRSIT--ALCGNDYRRVRLGIGHPGDKALVHAYVLNDFAKSE 153          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_METEP (Peptidyl-tRNA hydrolase OS=Methylobacterium extorquens (strain PA1) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 68/153 (44.44%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQE 606
            LIVGLGNPG +Y   RHN+GF  VD IA     +     F+    +  +G+   +L KPQTFMN SG+SVG    ++KIPL  V+V+ D+LDL  +K+R+   GG+ GHNG+RSI        E+ R+R+GIG P  K     +VL  F+K E
Sbjct:    3 LIVGLGNPGARYARNRHNIGFMAVDEIARVHRAAPFRRRFQGEAAEVMLGSERAILLKPQTFMNESGRSVGEAQRFFKIPLADVIVLHDELDLAPAKLRVKLGGGNAGHNGLRSIT--ALCGNEYRRVRLGIGHPGDKALVHAYVLNDFAKSE 153          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_METC4 (Peptidyl-tRNA hydrolase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 68/153 (44.44%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQE 606
            LIVGLGNPG +Y   RHN+GF  VD IA     +     F+    +  +G+   +L KPQTFMN SG+SVG    ++KIPL  V+V+ D+LDL  +K+R+   GG+ GHNG+RSI        E+ R+R+GIG P  K     +VL  F+K E
Sbjct:    3 LIVGLGNPGARYARNRHNIGFMAVDEIARVHRAAPFRRRFQGEAAEVMLGSERAILLKPQTFMNESGRSVGEAQRFFKIPLADVIVLHDELDLAPAKLRVKLGGGNAGHNGLRSIT--ALCGNEYRRVRLGIGHPGDKALVHAYVLNDFAKSE 153          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_LEGPA (Peptidyl-tRNA hydrolase OS=Legionella pneumophila (strain Paris) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 75/185 (40.54%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LIVGL NPG  Y  TRHN G  +V A+A+            +A   +  I N P  LA P TFMN SGQ+   I  +YKI   ++L++ D+LDLP  +++L   GGHGGHNG+R I     G+ EF RLRIGIG P  K     +VL   S  +RQ++     +G+  + I+L     +A   VN
Sbjct:    5 LIVGLRNPGSAYEQTRHNAGAWLVTALAQRHNSHFKIDKKMQAELTEIDINNHPCRLALPLTFMNHSGQTTRIISQFYKIEPGEILIVHDELDLPVGRIKLKTGGGHGGHNGLRDITAQL-GTGEFHRLRIGIGHPGHKDLVHQYVLSRPSMHDRQQIYDAIDRGIAIIPIVLSGDMARAMNQVN 188          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRATT (Peptidyl-tRNA hydrolase OS=Francisella tularensis subsp. tularensis GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 68/166 (40.96%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            +I+GLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L  P T+MN SG +V  + ++YKI   ++LV+ D+LD+   ++RL   GGHGGHNG+RSI  H  G+ ++ RLRIGIG P  K    N+VL   S  +++++D     G+
Sbjct:    6 MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 170          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_RHOPA7.905e-2841.56Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palust... [more]
PTH_PSESM7.905e-2837.77Peptidyl-tRNA hydrolase OS=Pseudomonas syringae pv... [more]
PTH_PSEPK7.905e-2839.27Peptidyl-tRNA hydrolase OS=Pseudomonas putida (str... [more]
PTH_PSEP17.905e-2839.27Peptidyl-tRNA hydrolase OS=Pseudomonas putida (str... [more]
PTH_PROMS7.905e-2839.88Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus... [more]
PTH_METPB7.905e-2843.79Peptidyl-tRNA hydrolase OS=Methylobacterium populi... [more]
PTH_METEP7.905e-2844.44Peptidyl-tRNA hydrolase OS=Methylobacterium extorq... [more]
PTH_METC47.905e-2844.44Peptidyl-tRNA hydrolase OS=Methylobacterium chloro... [more]
PTH_LEGPA7.905e-2840.54Peptidyl-tRNA hydrolase OS=Legionella pneumophila ... [more]
PTH_FRATT7.905e-2840.96Peptidyl-tRNA hydrolase OS=Francisella tularensis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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