FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRAT1 (Peptidyl-tRNA hydrolase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 68/166 (40.96%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            +I+GLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L  P T+MN SG +V  + ++YKI   ++LV+ D+LD+   ++RL   GGHGGHNG+RSI  H  G+ ++ RLRIGIG P  K    N+VL   S  +++++D     G+
Sbjct:    6 MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 170          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_DESAD (Peptidyl-tRNA hydrolase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 77/196 (39.29%), Postives = 104/196 (53.06%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH--------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKP 711
            LIVGLGNPG +Y  TRHN+GF  VDA+AE    S  S+ FK          F     GN  V+  KP T+MN SG++V +I   Y I +  V VI D+LDLP  +M+    GG+ GH G+ SI +   GS  F R+R+GIGRP       ++VL  F+ QE        Q  ++ + +    G   A  F+N+  P
Sbjct:    6 LIVGLGNPGSEYAKTRHNIGFMAVDALAEVAK-SRKSMRFKEMGISGDFELFSLNLAGN-NVLATKPLTYMNLSGKAVAAICGKYSIAVSDVYVIHDELDLPCGRMKFKKGGGNNGHRGLESIQEKM-GSPNFFRIRVGIGRPEFSSQVKDYVLEEFNTQELAIAAQMSQAAIKGLNLHFRRGQGTATQFMNSFMP 198          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CORDI (Peptidyl-tRNA hydrolase OS=Corynebacterium diphtheriae GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 66/174 (37.93%), Postives = 104/174 (59.77%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGI--SVSSVNFKAH--FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            P+LIVGLGN G +Y  TRHN+G+  +D +        +  +V+ K +    +  +G   V++AKP+ FMN +G SV  +  ++ +   +++V++DDLDL F  ++    GG  GHNG++SI     G++++ R  IGIGRPPG+M   +FVL+PFSK E+ EL        + V
Sbjct:    4 PYLIVGLGNLGPEYTKTRHNIGYMAIDELLTRTSPMPATLTVHKKTNTLVAETRLGTQKVIVAKPRAFMNVTGPSVRKLADFFTVDRNRIVVLYDDLDLEFGAIKFRHGGGDHGHNGLKSITQAL-GTKDYIRGGIGIGRPPGRMAPKSFVLKPFSKIEQSELPIVCADAADEV 176          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ACIC5 (Peptidyl-tRNA hydrolase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=pth PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.905e-28
Identity = 74/190 (38.95%), Postives = 108/190 (56.84%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI-PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMD----SVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            +L+VGLGNPG +Y  T HN GF  VDAIA      VS+   +A  GK  +G   V+LAKP+T+MN SG +V ++V      P++ +LV++D+LDLP   +R+  +G    HNG RSI     G+ ++PR+RIG+G P G+ D      N++L P  K +   LD   ++   AV  ++  G   A    N
Sbjct:    2 FLVVGLGNPGIEYQFTPHNAGFLAVDAIAAEHNAVVSNRRCQALTGKIQLGGREVILAKPETYMNLSGVAVSALVRELNADPVRDLLVLYDELDLPIGSIRVRERGSPASHNGARSICSAL-GTADWPRVRIGVG-PSGEDDLFRKGKNYLLTPMRKADLATLDGALERTARAVETVVTRGIGVAMNEFN 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSEPW (Peptidyl-tRNA hydrolase OS=Pseudomonas putida (strain W619) GN=pth PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 75/191 (39.27%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGK----GFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGLGNPG +Y  TRHN G   V+ IA A+ +S+++   + +FG        GN  V L  P T+MN SGQSV ++ ++++I  + +LV  D+LDLP    +L   GGHGGHNG+R II       +F RLR+GIG P       NFVL    + E+++LD +    +  +  +L   F KA   +++ K
Sbjct:    6 LIVGLGNPGPEYEQTRHNAGALFVERIASAQRVSLTAD--RKYFGLTAKFSHQGN-DVRLLIPTTYMNRSGQSVAALANFFRIKPEAILVAHDELDLPPGVAKLKRGGGHGGHNGLRDIIAQLGNQNDFHRLRLGIGHPGDAKLVSNFVLGRAPRAEQEKLDASIDFALGVLPDVLAGDFAKAMRELHSQK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSE14 (Peptidyl-tRNA hydrolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=pth PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 71/188 (37.77%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGLGNPG +Y  TRHN G   V+ IA A+ ++ V    F    G+       V L  P T+MN SGQ+V ++  +Y+IP++ +LV  D+LDLP    +L   GGHGGHNG+R II        F RLR+GIG P        FVL    + E+++LD +    +  +  +    +N+A   +++ K
Sbjct:    6 LIVGLGNPGAEYEQTRHNAGAFFVERIAAAQRVNLVPERKFFGLTGRFTHQGQDVRLLIPTTYMNRSGQAVAALAGFYRIPVESILVAHDELDLPPGVAKLKVGGGHGGHNGLRDIIAQLGNQNTFHRLRLGIGHPGDASKVSGFVLGRAPRAEQEKLDASIDFALGVLPDIFAGEWNRAMKNLHSQK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MARAV (Peptidyl-tRNA hydrolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=pth PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 70/185 (37.84%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            ++VGLGNPG  Y  TRHN G   V+A+A   G ++     +   + +     + + L  P TFMN SG ++ ++  ++KI  +Q+LV  D+LDLP    +L   GGHGGHNG+R  I H  G+ +F RLR+GIG P        FVL    KQE ++L   F    E +R+L      K A  +N
Sbjct:    7 MVVGLGNPGSDYENTRHNAGALFVEALAREAGQTLRPEKKYHGLYARIQWQGLDLHLLNPSTFMNRSGTAIKALADFFKISPEQILVAHDELDLPPGTAKLKKGGGHGGHNGLRDTIAHL-GTNDFQRLRLGIGHPGDSRKVTGFVLGRLGKQETEQLTAVFD---EVMRVLPDAASGKLAAAMN 187          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_LACF3 (Peptidyl-tRNA hydrolase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=pth PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 71/170 (41.76%), Postives = 103/170 (60.59%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDS-VNFVLRPFSKQERQELDFTFQQGVEAV 651
            +IVGLGN G +Y+ TRHN GF +V+ +A    +   +    +A    G I    VML KP TFMN SG++V  ++ YY I L  ++V+ DDLD+P  K++L  +G  GGHNG++S+IDH  G+REF R+++GI  P  K  S V+ VL  F  +ER   +    Q  +A+
Sbjct:    3 MIVGLGNIGTRYDETRHNAGFMVVEQLARDFHLGAFTHEKVEAVTVTGLINGQKVMLVKPTTFMNESGRAVKPLMEYYDIALDDLIVVSDDLDMPVGKIKLKQRGASGGHNGLKSLIDHL-GTREFNRVKLGIDHP--KFGSVVSHVLGRFDTEERPVFEGAVLQAEQAL 169          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRATO (Peptidyl-tRNA hydrolase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=pth PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            +IVGLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L  P T+MN SG +V  + ++YKI   ++LV  D+LD+   ++RL   GGHGGHNG+RSI  H  G+ ++ RLRIGIG P  K    N+VL   S  +++++D     G+
Sbjct:    6 MIVGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNTKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVAHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 170          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRATH (Peptidyl-tRNA hydrolase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=pth PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            +IVGLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L  P T+MN SG +V  + ++YKI   ++LV  D+LD+   ++RL   GGHGGHNG+RSI  H  G+ ++ RLRIGIG P  K    N+VL   S  +++++D     G+
Sbjct:    6 MIVGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNTKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVAHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 170          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_FRAT17.905e-2840.96Peptidyl-tRNA hydrolase OS=Francisella tularensis ... [more]
PTH_DESAD7.905e-2839.29Peptidyl-tRNA hydrolase OS=Desulfovibrio salexigen... [more]
PTH_CORDI7.905e-2837.93Peptidyl-tRNA hydrolase OS=Corynebacterium diphthe... [more]
PTH_ACIC57.905e-2838.95Peptidyl-tRNA hydrolase OS=Acidobacterium capsulat... [more]
PTH_PSEPW1.032e-2739.27Peptidyl-tRNA hydrolase OS=Pseudomonas putida (str... [more]
PTH_PSE141.032e-2737.77Peptidyl-tRNA hydrolase OS=Pseudomonas syringae pv... [more]
PTH_MARAV1.032e-2737.84Peptidyl-tRNA hydrolase OS=Marinobacter aquaeolei ... [more]
PTH_LACF31.032e-2741.76Peptidyl-tRNA hydrolase OS=Lactobacillus fermentum... [more]
PTH_FRATO1.032e-2741.57Peptidyl-tRNA hydrolase OS=Francisella tularensis ... [more]
PTH_FRATH1.032e-2741.57Peptidyl-tRNA hydrolase OS=Francisella tularensis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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