FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRATF (Peptidyl-tRNA hydrolase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=pth PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            +IVGLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L  P T+MN SG +V  + ++YKI   ++LV  D+LD+   ++RL   GGHGGHNG+RSI  H  G+ ++ RLRIGIG P  K    N+VL   S  +++++D     G+
Sbjct:    6 MIVGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNTKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVAHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 170          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ACTSZ (Peptidyl-tRNA hydrolase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=pth PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 67/188 (35.64%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGLGNPG +Y  TRHN G  ++D ++     ++     F     +  I    +    P TFMN SG+++G++ S+Y+I  +++L+  D+LDLP   +++   GGHGGHNG++  I     ++ F RLRIGIG P  +    ++VL   S  +   +D    + V  V ILL +G  KA   +N  K
Sbjct:    6 LIVGLGNPGDKYADTRHNAGEWLIDRLSRRFNFTLKDEAKFFGKTARTVIDGHEIRFLVPATFMNLSGKAIGALASFYRIRPEEILLAHDELDLPPGTVKIKQGGGHGGHNGLKDTIAQLGNNKNFYRLRIGIGHPGDRNLVTSYVLGKPSPADWALIDKALDEAVVCVEILLKDGITKATNRLNGFK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSEU2 (Peptidyl-tRNA hydrolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pth PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.348e-27
Identity = 71/188 (37.77%), Postives = 102/188 (54.26%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGLGNPG +Y  TRHN G   V+ IA A+ +  V    F    G+       V L  P T+MN SGQ+V ++  +Y+IP++ +LV  D+LDLP    +L   GGHGGHNG+R II        F RLR+GIG P        FVL    + E+++LD +    +  +  +    +N+A   +++ K
Sbjct:    6 LIVGLGNPGAEYEQTRHNAGAFFVERIAAAQRVDLVPERKFFGLTGRFTHQGQDVRLLIPTTYMNRSGQAVAALAGFYRIPVESILVAHDELDLPPGVAKLKVGGGHGGHNGLRDIIAQLGNQNTFHRLRLGIGHPGDASKVSGFVLGRAPRAEQEKLDASIDFALGVLPDIFAGEWNRAMKNLHSQK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSEE4 (Peptidyl-tRNA hydrolase OS=Pseudomonas entomophila (strain L48) GN=pth PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.348e-27
Identity = 74/183 (40.44%), Postives = 105/183 (57.38%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGK----GFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684
            LIVGLGNPG +Y  TRHN G   V+ +A A+ +S+++   K +FG        GN  V L  P T+MN SGQSV ++ ++++I  + +LV  D+LDLP    +L   GGHGGHNG+R II       +F RLR+GIG P       NFVL    + E+++LD +    +  +  +L   F KA
Sbjct:    6 LIVGLGNPGPEYEQTRHNAGALFVERLASAQRVSLTAD--KKYFGLTAKFSHQGN-DVRLLIPTTYMNRSGQSVAALANFFRIKPEAILVAHDELDLPPGVAKLKRGGGHGGHNGLRDIIAQLGNQNDFHRLRLGIGHPGDAKLVSNFVLGRAPRAEQEKLDASIDFALGVMPDVLAGDFAKA 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSEA7 (Peptidyl-tRNA hydrolase OS=Pseudomonas aeruginosa (strain PA7) GN=pth PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.348e-27
Identity = 72/168 (42.86%), Postives = 94/168 (55.95%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVL--RPFSKQERQELDFTFQQGV 642
            LIVGLGNPG +Y+ TRHN G   V+ +A A+GIS V+   +    GK       V L  P T+MN SGQSV ++  +++IP   +LV  D+LD+P    +L   GGHGGHNG+R II        F RLR+GIG P        +VL   P S+QE  +    F  GV
Sbjct:    6 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGISLVAERKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIPPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGV 173          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PROM2 (Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus (strain MIT 9215) GN=pth PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.348e-27
Identity = 67/176 (38.07%), Postives = 108/176 (61.36%), Query Frame = 1
Query:  151 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPP-----GKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRIL 660
            ++GLGNPGK++  +RHN+GF +++  ++    + +     K+ + +  I N    L  P TFMN SG +V +IV +YKI L Q+ +I DD DLP  K+R   KG  GGHNG++SII+  + +++F R+RIGIG PP        ++++ VL   S +E+  LD  F++ +E++  L
Sbjct:    6 LIGLGNPGKKFLNSRHNIGFLLLEYFSKKYNSNFLFKDKLKSSYSEFQIDNSSYRLFLPNTFMNNSGYAVRAIVDWYKINLDQIFIIVDDKDLPLGKIRFRRKGSSGGHNGLKSIIEQLQ-TQKFKRIRIGIGSPPPIKGEKNFNTISHVLGNISLEEKSILDKVFRRVIESLEKL 180          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_NOVAD (Peptidyl-tRNA hydrolase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=pth PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.348e-27
Identity = 69/157 (43.95%), Postives = 91/157 (57.96%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQEL 618
            L VGLGNPG QY   RHNVGF  +D IAE          F+    +G IG   V+L KP TFMN SG+SVG  + +YK+ +  ++V  D+LDL   K+++   GG  GHNG+RSI  H     +F R+R+GIG P  K      VL  F+K E+ +L
Sbjct:    3 LWVGLGNPGPQYALHRHNVGFMALDTIAEVHNFGPVQKKFQGWLQEGRIGTEKVLLLKPATFMNESGRSVGEAMRFYKLGMDALVVFHDELDLAPFKVKVKQGGGTAGHNGLRSIDKHL--GPDFLRVRLGIGHPGHKDRVTGHVLGNFAKSEQDDL 157          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_FRAP2 (Peptidyl-tRNA hydrolase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=pth PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.348e-27
Identity = 69/167 (41.32%), Postives = 100/167 (59.88%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEA--EGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            +IVGLGN GK+Y  TRHNVG   +  IA+   E  S++S     +  K  I    ++L  P TFMN SG +V  + ++YKI  +++LV+ D+LD+   ++RL   GGHGGHNG+RSI  H  G+ ++ RLRIGIG P  K    N+VL   S  ++ ++D     G+
Sbjct:    6 MIVGLGNIGKEYENTRHNVGEWFIAKIAKDNNENFSLNS-KLNCNIAKVNINYNNIILVFPTTFMNNSGLAVSKVANFYKIEPEEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSIHQHL-GTNDYLRLRIGIGHPGHKSKVSNYVLSNPSVAQKNDIDNAIDNGI 170          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CAMHC (Peptidyl-tRNA hydrolase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=pth PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.348e-27
Identity = 73/178 (41.01%), Postives = 108/178 (60.67%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH-FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFN 678
            LIVGLGNPG +Y  T+HN+GF ++D +  ++  S+ S  F+   F KG      ++L KPQTFMN SG SV ++  +YK   ++++VI DDLDL F  +R    G  GGHNG++S ID+  G+ ++ R+RIGIGR  G+ ++ N VL  F+  E ++L        +AV  L+    N
Sbjct:    3 LIVGLGNPGNEYKNTKHNIGFMLIDELLSSDFSSLKSSKFQGELFKKG-----EILLLKPQTFMNLSGNSVKAVNDFYK--PERIIVIHDDLDLNFGALRFKRGGSSGGHNGIKS-IDNLIGN-DYERVRIGIGR--GQGNAANIVLSKFNNDEDKKLVEILSTAKKAVEFLIKNDIN 169          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_XYLFA (Peptidyl-tRNA hydrolase OS=Xylella fastidiosa GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 73/186 (39.25%), Postives = 106/186 (56.99%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            LIVGLGNPG ++  TRHN GF  VD + + EG   +      AH  + FI    V L +P TFMN SG+S+ + +S++KI  +Q+LV  D+LD P   +RL   GGHGG NG+R  I    G   F RLR+GIG P  K   VN+VL   + +E   +D   ++    + +++   F++A   ++T
Sbjct:    6 LIVGLGNPGSEHTKTRHNAGFRFVDGLVQREGQRWMLESKLFAHVARVFIAGQWVWLLRPVTFMNLSGKSICAGLSFWKIKPEQMLVAHDELDFPPGAVRLKFDGGHGGQNGLRD-ITKLLGHGRFHRLRVGIGHPGHKDRVVNWVLGCPTCEENIAIDAALERASAVLPLVVAGDFDEAMKKLHT 190          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_FRATF1.032e-2741.57Peptidyl-tRNA hydrolase OS=Francisella tularensis ... [more]
PTH_ACTSZ1.032e-2735.64Peptidyl-tRNA hydrolase OS=Actinobacillus succinog... [more]
PTH_PSEU21.348e-2737.77Peptidyl-tRNA hydrolase OS=Pseudomonas syringae pv... [more]
PTH_PSEE41.348e-2740.44Peptidyl-tRNA hydrolase OS=Pseudomonas entomophila... [more]
PTH_PSEA71.348e-2742.86Peptidyl-tRNA hydrolase OS=Pseudomonas aeruginosa ... [more]
PTH_PROM21.348e-2738.07Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus... [more]
PTH_NOVAD1.348e-2743.95Peptidyl-tRNA hydrolase OS=Novosphingobium aromati... [more]
PTH_FRAP21.348e-2741.32Peptidyl-tRNA hydrolase OS=Francisella philomiragi... [more]
PTH_CAMHC1.348e-2741.01Peptidyl-tRNA hydrolase OS=Campylobacter hominis (... [more]
PTH_XYLFA1.761e-2739.25Peptidyl-tRNA hydrolase OS=Xylella fastidiosa GN=p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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