FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_VIBHB (Peptidyl-tRNA hydrolase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 66/188 (35.11%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSV-NFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            L+VGL NPG +Y  TRHN G  +V+ +A    +++ +   F    G+  +    + L  P TFMN SG+++ ++  +Y+I  ++++V  D+LDL     +    GGHGGHNG+R  I     +++F RLRIGIG P  K     FVL     +E++ LD    + V  + IL+ +G +KA   ++T K
Sbjct:    7 LLVGLANPGPEYAKTRHNAGAWVVEELARVHNVTLKNEPKFFGLTGRIMVNGQDLRLLIPTTFMNLSGKAIAALAKFYQIKPEEIMVAHDELDLLPGVAKFKKGGGHGGHNGLRDTISKLGNNKDFYRLRIGIGHPGHKDKVAGFVLGKAPAKEQELLDAAADESVRCLDILIKDGLSKAQNRLHTFK 194          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALTY (Peptidyl-tRNA hydrolase OS=Salmonella typhimurium GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALTI (Peptidyl-tRNA hydrolase OS=Salmonella typhi GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALSV (Peptidyl-tRNA hydrolase OS=Salmonella schwarzengrund (strain CVM19633) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALPA (Peptidyl-tRNA hydrolase OS=Salmonella paratyphi A GN=pth PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALNS (Peptidyl-tRNA hydrolase OS=Salmonella newport (strain SL254) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALHS (Peptidyl-tRNA hydrolase OS=Salmonella heidelberg (strain SL476) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKSKVVGFVLGKPPVSEQKLIDEAIYEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALG2 (Peptidyl-tRNA hydrolase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALEP (Peptidyl-tRNA hydrolase OS=Salmonella enteritidis PT4 (strain P125109) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALDC (Peptidyl-tRNA hydrolase OS=Salmonella dublin (strain CT_02021853) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGTMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_VIBHB1.761e-2735.11Peptidyl-tRNA hydrolase OS=Vibrio harveyi (strain ... [more]
PTH_SALTY1.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella typhimurium ... [more]
PTH_SALTI1.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella typhi GN=pth... [more]
PTH_SALSV1.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella schwarzengru... [more]
PTH_SALPA1.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella paratyphi A ... [more]
PTH_SALNS1.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella newport (str... [more]
PTH_SALHS1.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella heidelberg (... [more]
PTH_SALG21.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella gallinarum (... [more]
PTH_SALEP1.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella enteritidis ... [more]
PTH_SALDC1.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella dublin (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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