FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALA4 (Peptidyl-tRNA hydrolase OS=Salmonella agona (strain SL483) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_RICAE (Peptidyl-tRNA hydrolase OS=Rickettsia africae (strain ESF-5) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 74/188 (39.36%), Postives = 107/188 (56.91%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRI---LLLEGFNKAATFVN 699
            L++GLGNPGK+Y  TRHNVGF  ++ IA     S S+   F     +       ++  KP T+MN SG+SV S+ +YY I   ++ VI DD+DL   +++    GG+GGHNG++S ID   G+  + R+RIG+GRP    D  ++VL  FSK E +    T  Q ++ +     L+LE  NK   F N
Sbjct:    3 LVIGLGNPGKEYQYTRHNVGFIAIEKIANQYNSSFSTKKKFNCEIAETISDGQKIIFIKPTTYMNLSGKSVISVKTYYNIYPAKIFVIHDDIDLDTGRIKFKTGGGNGGHNGLKS-IDGVIGN-NYNRIRIGVGRPQNNQDVADYVLNHFSKPEYE----TVMQAIDRITSNFGLILE--NKLEEFKN 182          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_METSB (Peptidyl-tRNA hydrolase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 69/158 (43.67%), Postives = 95/158 (60.13%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPV-----MLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQE 606
            L+VGLGNPGK Y G RHN+GF  +D IA       S+  F++ F  G I  + +     +L  PQT+MN SG+SVG    Y KI  K ++V+ D+LDLP  K+R+   GG+ GHNG++SI  H     E+ R+R+GIG P  +    N+VL  F+K E
Sbjct:    3 LLVGLGNPGKAYAGNRHNIGFMALDQIAR----DYSAPPFRSKFN-GLISEITLAGERCVLLAPQTYMNDSGRSVGEAARYLKIEPKDIVVLHDELDLPAGKVRVKTGGGNAGHNGLKSITAHI--GNEYRRVRLGIGHPGDRALVHNYVLGDFAKSE 153          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_EDWI9 (Peptidyl-tRNA hydrolase OS=Edwardsiella ictaluri (strain 93-146) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 70/185 (37.84%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LIVGL NPG +Y  TRHN G   VDA+AE  G S+   + F  +  +  +    + L  P TFMN SG++V ++  +Y+I   ++LV  D+LDLP    +L   GG+GGHNG++ I      +  F RLRIGIG P  K   V FVL      E+  +D    + +    +L+ +G +KA   +N
Sbjct:    5 LIVGLANPGAEYAQTRHNAGAWFVDALAERHGQSLKEESKFFGYTARLSLAGHDLRLLVPTTFMNLSGKAVSALAGFYRIAPDEILVAHDELDLPPGVAKLKLGGGNGGHNGLKDIQSKLGNNPNFHRLRIGIGHPGDKSKVVGFVLGKPLASEQPLIDDAIDEALRCTDLLMQDGMDKAMNRLN 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_DECAR (Peptidyl-tRNA hydrolase OS=Dechloromonas aromatica (strain RCB) GN=pth PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.761e-27
Identity = 71/163 (43.56%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPG---KMDSVNFVLRPFSKQERQELD 621
            P LIVGLGNPG +Y  TRHNVGF  VD +A+   +S++    +A F           L +P TFMN SGQ+V ++ ++YKIP  ++LVI D+LDLP   +RL   GG+GGHNG++ I     G+ +F RLR+GIG P         V+FVL    K+E  +++
Sbjct:    4 PRLIVGLGNPGPEYEATRHNVGFWFVDQLADKLKVSLAP---QAKFFGRAARTGETWLLQPTTFMNRSGQAVAALANFYKIPADEILVIHDELDLPPGGIRLKQGGGNGGHNGLKDIQAKL-GTPDFWRLRLGIGHPRTLNLSQQVVDFVLHQPRKEELPDIE 162          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SHIB3 (Peptidyl-tRNA hydrolase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=pth PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.300e-27
Identity = 70/188 (37.23%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +G   V L  P TFMN SG++V ++ S+++I   ++LV  D+LDLP    +L   GGHGGHNG++ II     +  F RLRIGIG P  K   V FVL      E++ +D    +      +   +G  KA   ++  K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKLKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SHELP (Peptidyl-tRNA hydrolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=pth PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.300e-27
Identity = 68/180 (37.78%), Postives = 100/180 (55.56%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684
            LIVGL NPG +Y  TRHN G   V+ +A   G+S V+   +     +  +    V L  P TFMN SG+SVG++ ++++I   ++LV  D+LD+P    +    GGHGGHNG++ II      + F RLRIGIG P  K    N+VL    + E++ ++    + V A  +L  E  +KA
Sbjct:    6 LIVGLANPGDKYEQTRHNAGAWYVNELARVCGVSLVADSKYYGLTARATLYGKDVRLLIPTTFMNLSGKSVGALANFFRIAPDEILVAHDELDMPPGVAKFKLGGGHGGHNGLKDIIAKLANDKGFYRLRIGIGHPGDKSMVSNYVLGKAPQTEQRLIEEVIDEAVRATEVLFKEDMSKA 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SALPB (Peptidyl-tRNA hydrolase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=pth PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.300e-27
Identity = 70/188 (37.23%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   +D +AE     +     F  +  +  +    V L  P TFMN SG++VG++ S+Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    +      +   EG  KA + ++T K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYIDLLAERLRAPLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_RICPU (Peptidyl-tRNA hydrolase OS=Rickettsia peacockii (strain Rustic) GN=pth PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.300e-27
Identity = 74/188 (39.36%), Postives = 107/188 (56.91%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRI---LLLEGFNKAATFVN 699
            L++GLGNPGK+Y  TRHNVGF  ++ IA     S S+   F     +       ++  KP T+MN SG+SV S+ +YY I   ++ VI DD+DL   +++    GG+GGHNG++S ID   G+  + R+RIG+GRP    D  ++VL  FSK E +    T  Q ++ +     L+LE  NK   F N
Sbjct:    3 LVIGLGNPGKEYQYTRHNVGFIAIEKIANQYNSSFSTKKKFNCEIAETISDRQKIIFIKPTTYMNLSGKSVISVKTYYNIYPAKIFVIHDDIDLETGRIKFKTGGGNGGHNGLKS-IDGVIGN-NYNRIRIGVGRPQNNQDVADYVLNHFSKPEYK----TVMQAIDRITSNFGLILE--NKLEEFKN 182          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PSEF5 (Peptidyl-tRNA hydrolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pth PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.300e-27
Identity = 70/188 (37.23%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGLGNPG +Y  TRHN G   V+ IAE +GI+ V+   +    G+       + L  P T+MN SGQ+V ++  +++I  +++LV  D+LDLP    +L   GGHGGHNG+R II        F RLR+GIG P       NFVL    + E+++LD +    +  +  +    +N+A   +++ K
Sbjct:    6 LIVGLGNPGTEYEQTRHNAGALFVERIAEKQGINLVADRKYFGLTGRFSHQGQDIRLLIPTTYMNRSGQAVAALAGFFRIKPEEILVAHDELDLPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNTFHRLRLGIGHPGVASMVSNFVLGRAPRAEQEKLDASIDFALGVLPDIFAGEWNRAMKNLHSQK 193          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_SALA41.761e-2737.77Peptidyl-tRNA hydrolase OS=Salmonella agona (strai... [more]
PTH_RICAE1.761e-2739.36Peptidyl-tRNA hydrolase OS=Rickettsia africae (str... [more]
PTH_METSB1.761e-2743.67Peptidyl-tRNA hydrolase OS=Methylocella silvestris... [more]
PTH_EDWI91.761e-2737.84Peptidyl-tRNA hydrolase OS=Edwardsiella ictaluri (... [more]
PTH_DECAR1.761e-2743.56Peptidyl-tRNA hydrolase OS=Dechloromonas aromatica... [more]
PTH_SHIB32.300e-2737.23Peptidyl-tRNA hydrolase OS=Shigella boydii serotyp... [more]
PTH_SHELP2.300e-2737.78Peptidyl-tRNA hydrolase OS=Shewanella loihica (str... [more]
PTH_SALPB2.300e-2737.23Peptidyl-tRNA hydrolase OS=Salmonella paratyphi B ... [more]
PTH_RICPU2.300e-2739.36Peptidyl-tRNA hydrolase OS=Rickettsia peacockii (s... [more]
PTH_PSEF52.300e-2737.23Peptidyl-tRNA hydrolase OS=Pseudomonas fluorescens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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