FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BURMA (Peptidyl-tRNA hydrolase OS=Burkholderia mallei GN=pth PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27
Identity = 70/176 (39.77%), Postives = 99/176 (56.25%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRP----------PGKMDSVNFVLRPFSKQERQELDFTFQQGV 642
            LIVGLGNPG +Y  TRHN GF +VD +A   G ++     F   + K  +    V L +PQT+MN SGQ+V ++  ++KI   ++LV  D+LDLP    +L    G GGHNG++ I  H   S+++ RLRIGIG P            K D  NFVL+P  K E+  +D   ++ +
Sbjct:    4 LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLFGEEVHLLEPQTYMNRSGQAVVALAHFFKILPTEILVAHDELDLPPGAAKLKLGSGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDLIPESARAGAKPDVANFVLKPPRKDEQDLIDAAIERAL 178          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_VIBSL (Peptidyl-tRNA hydrolase OS=Vibrio splendidus (strain LGP32) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27
Identity = 66/188 (35.11%), Postives = 107/188 (56.91%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSV-NFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            L+VGL NPG +Y  TRHN G  +V+ +A    +++ +   F    G+  +    + L  P TFMN SG++V ++  +Y+I  ++++V  D+LDLP    +    GGHGGHNG++ II     ++EF RLR+GIG P  K     +VL     +E++ ++    + V ++ ILL +G  KA   ++T K
Sbjct:    7 LLVGLANPGPEYAKTRHNAGAWVVEELARVHNVTLKNEPKFFGLTGRIMVHGEDLRLLIPTTFMNLSGKAVAALAKFYQIKPEEIMVAHDELDLPPGIGKFKKGGGHGGHNGLKDIISKQGNNKEFYRLRLGIGHPGHKDKVAGYVLGKAPAKEQECIEAVVDESVRSLDILLKDGLPKAQNRLHTFK 194          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PROMP (Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27
Identity = 66/173 (38.15%), Postives = 104/173 (60.12%), Query Frame = 1
Query:  151 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPP-----GKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            I+GLGNPGK+Y   RHN+GF +++  +E      +  N  K+ + +  I N    L  P TFMN SG +V +IV +YKI L ++ +I DD+DLP  K+R   KG  GGHNG++ II+  + +  F R++IGIG PP       +++++ VL   S +E   LD  +++ +E++
Sbjct:    8 IIGLGNPGKEYIQNRHNIGFLLLENFSEKYDSKFTLKNKLKSWYSEFKINNFTYRLFMPNTFMNNSGNAVRAIVDWYKIDLDRLFIIVDDIDLPLGKIRFRKKGSSGGHNGIKDIINKLQ-TENFNRIKIGIGSPPVNERKKTLNTISHVLGNISSKESLTLDRVYKKLIESL 179          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_METNO (Peptidyl-tRNA hydrolase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27
Identity = 67/158 (42.41%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELD 621
            L VGLGNPG +Y G RHN+GF  +DAIA     +     F+    +  +G+  V+L KP+T+MN SG++V     +YKI L  V+V  D+LDL  +K+R+   GG+ GHNG+RSI        E+ R+R+GIG P  K     +VL  F+K ER  +D
Sbjct:    3 LFVGLGNPGSRYAGNRHNIGFMALDAIARRHRAAPWRRKFQGEASEAVLGSERVLLLKPETYMNESGRAVAEAQRFYKIALDDVVVFHDELDLGPTKVRVKRGGGNAGHNGLRSIT--ALCGNEYWRVRLGIGHPGDKALVHAYVLNDFAKAERPWVD 158          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_METI4 (Peptidyl-tRNA hydrolase OS=Methylacidiphilum infernorum (isolate V4) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27
Identity = 64/179 (35.75%), Postives = 105/179 (58.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684
            ++VGLGNPG++Y  TRHN+G+ +V+ + + + +S   ++ KA     F   +  +L  P T+MN SGQ++  ++   K   K +LVI DD+ LP  K+R  PKG  GGH G+ SII+    + + PRLR+GIG  P      ++VL+PF ++E+ +++    + ++    L  EG   A
Sbjct:    6 IVVGLGNPGQEYEKTRHNIGWRVVEELVKRQNLSFK-IDKKAKSKVAFKEKLVFVL--PLTYMNLSGQALSYLLQKEKCSSKDILVILDDISLPLGKLRFRPKGSSGGHKGLESIIEELH-TEDIPRLRLGIGPLPEGEQLADYVLKPFLEEEKDKVEEMILKAIQFFECLQKEGIEIA 180          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ENT38 (Peptidyl-tRNA hydrolase OS=Enterobacter sp. (strain 638) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27
Identity = 70/188 (37.23%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +    V L  P TFMN SG++V ++ ++Y+I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLR+GIG P  K   V FVL      E++ +D    + V    I L +G  KA   ++  K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRINLAGADVRLLVPTTFMNLSGKAVAAMATFYRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPSSEQKLIDEAVDEAVSCTEIWLQDGLTKATNRLHAFK 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CAMC1 (Peptidyl-tRNA hydrolase OS=Campylobacter concisus (strain 13826) GN=pth PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27
Identity = 75/178 (42.13%), Postives = 107/178 (60.11%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNK 681
            LI GLGNPG +Y  TRHN+GF ++D + ++    VSS  F+    K F G   ++L KP TFMN SGQSV ++  +YK    +++VI DDLDL F  ++    G  GGHNG++S ID+  G+ ++ R+R+GIG    + D+ NFVL  FS +E++ LD        AV  LL    N+
Sbjct:    3 LIAGLGNPGPKYENTRHNIGFMLIDLLKDSNFKDVSSAKFQGEVFK-FNG---IILLKPTTFMNLSGQSVKAVRDFYK--PDRIIVIHDDLDLSFGAVKFKKGGSSGGHNGIKS-IDNLIGN-DYERVRVGIGH---EGDAKNFVLGEFSDEEKKALDEILAYTKNAVCELLKSDINE 169          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BORA1 (Peptidyl-tRNA hydrolase OS=Bordetella avium (strain 197N) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27
Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFG--KGFIGNVP--------VMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPG---KMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTA 705
            LIVGLGNPG  Y  TRHN GF + D +A+         + +A F   KGF+G V         V+L KP T+MN SGQ+VG++  +YK+  +QVLV+ D+LDL   ++++   GGH GHNG++  I    G+  F RLR+GIG P          +FVL P  + E+ E+D    +    V  LL   F +A   ++TA
Sbjct:   19 LIVGLGNPGPDYETTRHNAGFWLADRLAD---------DLRATFALEKGFMGMVAKARFEGENVLLLKPITYMNRSGQAVGALARFYKLAPEQVLVLHDELDLLPGQVKMKQGGGHAGHNGLKD-IQAALGTPNFWRLRLGIGHPRTLNLAQQVADFVLHPPRRDEQAEIDTVIDRCRAVVPALLRGDFAQATRQLHTA 207          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ACIAD (Peptidyl-tRNA hydrolase OS=Acinetobacter sp. (strain ADP1) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27
Identity = 73/189 (38.62%), Postives = 99/189 (52.38%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKP 711
            LIVGLGNPG +Y  TRHN GF  V+ +A+   I++     F    G+G I    V L  P TFMN SGQSV     +Y+I  + +L+  D+LD+    +RL   GGHGGHNG+R I+ H      F RLRIGIG P  K      VL    + E+  ++      +   R+L+     +A   +N  KP
Sbjct:    6 LIVGLGNPGAEYAQTRHNAGFWFVEQLADRYNITLKKDPKFHGFSGRGQIEGHDVRLLIPTTFMNRSGQSVVPFSKFYQISPEAILIAHDELDMDPGVIRLKTGGGHGGHNGLRDIVPHI--GANFHRLRIGIGHPGSKDRVSGHVLGKAPQNEQTLMEDAIHHALSNTRLLVDGQIAQAMNQINAYKP 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SHIFL (Peptidyl-tRNA hydrolase OS=Shigella flexneri GN=pth PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.124e-27
Identity = 69/188 (36.70%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +G+  V L  P TFMN SG++V ++ S+++I   ++LV  D+LDLP    +    GGHGGHNG++ II     +  F RLRIGIG P  K   V FVL      E++ +D    +      +   +G  KA   ++  K
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGSEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFK 192          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_BURMA3.004e-2739.77Peptidyl-tRNA hydrolase OS=Burkholderia mallei GN=... [more]
PTH_VIBSL3.923e-2735.11Peptidyl-tRNA hydrolase OS=Vibrio splendidus (stra... [more]
PTH_PROMP3.923e-2738.15Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus... [more]
PTH_METNO3.923e-2742.41Peptidyl-tRNA hydrolase OS=Methylobacterium nodula... [more]
PTH_METI43.923e-2735.75Peptidyl-tRNA hydrolase OS=Methylacidiphilum infer... [more]
PTH_ENT383.923e-2737.23Peptidyl-tRNA hydrolase OS=Enterobacter sp. (strai... [more]
PTH_CAMC13.923e-2742.13Peptidyl-tRNA hydrolase OS=Campylobacter concisus ... [more]
PTH_BORA13.923e-2739.20Peptidyl-tRNA hydrolase OS=Bordetella avium (strai... [more]
PTH_ACIAD3.923e-2738.62Peptidyl-tRNA hydrolase OS=Acinetobacter sp. (stra... [more]
PTH_SHIFL5.124e-2736.70Peptidyl-tRNA hydrolase OS=Shigella flexneri GN=pt... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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