FC873342
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BURMA (Peptidyl-tRNA hydrolase OS=Burkholderia mallei GN=pth PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.004e-27 Identity = 70/176 (39.77%), Postives = 99/176 (56.25%), Query Frame = 1 Query: 148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRP----------PGKMDSVNFVLRPFSKQERQELDFTFQQGV 642 LIVGLGNPG +Y TRHN GF +VD +A G ++ F + K + V L +PQT+MN SGQ+V ++ ++KI ++LV D+LDLP +L G GGHNG++ I H S+++ RLRIGIG P K D NFVL+P K E+ +D ++ + Sbjct: 4 LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLFGEEVHLLEPQTYMNRSGQAVVALAHFFKILPTEILVAHDELDLPPGAAKLKLGSGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDLIPESARAGAKPDVANFVLKPPRKDEQDLIDAAIERAL 178
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_VIBSL (Peptidyl-tRNA hydrolase OS=Vibrio splendidus (strain LGP32) GN=pth PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27 Identity = 66/188 (35.11%), Postives = 107/188 (56.91%), Query Frame = 1 Query: 148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSV-NFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708 L+VGL NPG +Y TRHN G +V+ +A +++ + F G+ + + L P TFMN SG++V ++ +Y+I ++++V D+LDLP + GGHGGHNG++ II ++EF RLR+GIG P K +VL +E++ ++ + V ++ ILL +G KA ++T K Sbjct: 7 LLVGLANPGPEYAKTRHNAGAWVVEELARVHNVTLKNEPKFFGLTGRIMVHGEDLRLLIPTTFMNLSGKAVAALAKFYQIKPEEIMVAHDELDLPPGIGKFKKGGGHGGHNGLKDIISKQGNNKEFYRLRLGIGHPGHKDKVAGYVLGKAPAKEQECIEAVVDESVRSLDILLKDGLPKAQNRLHTFK 194
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PROMP (Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pth PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27 Identity = 66/173 (38.15%), Postives = 104/173 (60.12%), Query Frame = 1 Query: 151 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPP-----GKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651 I+GLGNPGK+Y RHN+GF +++ +E + N K+ + + I N L P TFMN SG +V +IV +YKI L ++ +I DD+DLP K+R KG GGHNG++ II+ + + F R++IGIG PP +++++ VL S +E LD +++ +E++ Sbjct: 8 IIGLGNPGKEYIQNRHNIGFLLLENFSEKYDSKFTLKNKLKSWYSEFKINNFTYRLFMPNTFMNNSGNAVRAIVDWYKIDLDRLFIIVDDIDLPLGKIRFRKKGSSGGHNGIKDIINKLQ-TENFNRIKIGIGSPPVNERKKTLNTISHVLGNISSKESLTLDRVYKKLIESL 179
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_METNO (Peptidyl-tRNA hydrolase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=pth PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27 Identity = 67/158 (42.41%), Postives = 94/158 (59.49%), Query Frame = 1 Query: 148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELD 621 L VGLGNPG +Y G RHN+GF +DAIA + F+ + +G+ V+L KP+T+MN SG++V +YKI L V+V D+LDL +K+R+ GG+ GHNG+RSI E+ R+R+GIG P K +VL F+K ER +D Sbjct: 3 LFVGLGNPGSRYAGNRHNIGFMALDAIARRHRAAPWRRKFQGEASEAVLGSERVLLLKPETYMNESGRAVAEAQRFYKIALDDVVVFHDELDLGPTKVRVKRGGGNAGHNGLRSIT--ALCGNEYWRVRLGIGHPGDKALVHAYVLNDFAKAERPWVD 158
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_METI4 (Peptidyl-tRNA hydrolase OS=Methylacidiphilum infernorum (isolate V4) GN=pth PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27 Identity = 64/179 (35.75%), Postives = 105/179 (58.66%), Query Frame = 1 Query: 148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684 ++VGLGNPG++Y TRHN+G+ +V+ + + + +S ++ KA F + +L P T+MN SGQ++ ++ K K +LVI DD+ LP K+R PKG GGH G+ SII+ + + PRLR+GIG P ++VL+PF ++E+ +++ + ++ L EG A Sbjct: 6 IVVGLGNPGQEYEKTRHNIGWRVVEELVKRQNLSFK-IDKKAKSKVAFKEKLVFVL--PLTYMNLSGQALSYLLQKEKCSSKDILVILDDISLPLGKLRFRPKGSSGGHKGLESIIEELH-TEDIPRLRLGIGPLPEGEQLADYVLKPFLEEEKDKVEEMILKAIQFFECLQKEGIEIA 180
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ENT38 (Peptidyl-tRNA hydrolase OS=Enterobacter sp. (strain 638) GN=pth PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27 Identity = 70/188 (37.23%), Postives = 98/188 (52.13%), Query Frame = 1 Query: 148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708 LIVGL NPG +Y TRHN G VD +AE + F + + + V L P TFMN SG++V ++ ++Y+I ++LV D+LDLP + GGHGGHNG++ II + F RLR+GIG P K V FVL E++ +D + V I L +G KA ++ K Sbjct: 5 LIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPKFFGYTSRINLAGADVRLLVPTTFMNLSGKAVAAMATFYRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPSSEQKLIDEAVDEAVSCTEIWLQDGLTKATNRLHAFK 192
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CAMC1 (Peptidyl-tRNA hydrolase OS=Campylobacter concisus (strain 13826) GN=pth PE=3 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27 Identity = 75/178 (42.13%), Postives = 107/178 (60.11%), Query Frame = 1 Query: 148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNK 681 LI GLGNPG +Y TRHN+GF ++D + ++ VSS F+ K F G ++L KP TFMN SGQSV ++ +YK +++VI DDLDL F ++ G GGHNG++S ID+ G+ ++ R+R+GIG + D+ NFVL FS +E++ LD AV LL N+ Sbjct: 3 LIAGLGNPGPKYENTRHNIGFMLIDLLKDSNFKDVSSAKFQGEVFK-FNG---IILLKPTTFMNLSGQSVKAVRDFYK--PDRIIVIHDDLDLSFGAVKFKKGGSSGGHNGIKS-IDNLIGN-DYERVRVGIGH---EGDAKNFVLGEFSDEEKKALDEILAYTKNAVCELLKSDINE 169
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BORA1 (Peptidyl-tRNA hydrolase OS=Bordetella avium (strain 197N) GN=pth PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27 Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 1 Query: 148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFG--KGFIGNVP--------VMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPG---KMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTA 705 LIVGLGNPG Y TRHN GF + D +A+ + +A F KGF+G V V+L KP T+MN SGQ+VG++ +YK+ +QVLV+ D+LDL ++++ GGH GHNG++ I G+ F RLR+GIG P +FVL P + E+ E+D + V LL F +A ++TA Sbjct: 19 LIVGLGNPGPDYETTRHNAGFWLADRLAD---------DLRATFALEKGFMGMVAKARFEGENVLLLKPITYMNRSGQAVGALARFYKLAPEQVLVLHDELDLLPGQVKMKQGGGHAGHNGLKD-IQAALGTPNFWRLRLGIGHPRTLNLAQQVADFVLHPPRRDEQAEIDTVIDRCRAVVPALLRGDFAQATRQLHTA 207
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ACIAD (Peptidyl-tRNA hydrolase OS=Acinetobacter sp. (strain ADP1) GN=pth PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.923e-27 Identity = 73/189 (38.62%), Postives = 99/189 (52.38%), Query Frame = 1 Query: 148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKP 711 LIVGLGNPG +Y TRHN GF V+ +A+ I++ F G+G I V L P TFMN SGQSV +Y+I + +L+ D+LD+ +RL GGHGGHNG+R I+ H F RLRIGIG P K VL + E+ ++ + R+L+ +A +N KP Sbjct: 6 LIVGLGNPGAEYAQTRHNAGFWFVEQLADRYNITLKKDPKFHGFSGRGQIEGHDVRLLIPTTFMNRSGQSVVPFSKFYQISPEAILIAHDELDMDPGVIRLKTGGGHGGHNGLRDIVPHI--GANFHRLRIGIGHPGSKDRVSGHVLGKAPQNEQTLMEDAIHHALSNTRLLVDGQIAQAMNQINAYKP 192
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SHIFL (Peptidyl-tRNA hydrolase OS=Shigella flexneri GN=pth PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.124e-27 Identity = 69/188 (36.70%), Postives = 98/188 (52.13%), Query Frame = 1 Query: 148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708 LIVGL NPG +Y TRHN G VD +AE + F + + +G+ V L P TFMN SG++V ++ S+++I ++LV D+LDLP + GGHGGHNG++ II + F RLRIGIG P K V FVL E++ +D + + +G KA ++ K Sbjct: 5 LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGSEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFK 192 The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bpback to top |